Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NG827_RS13265 Genome accession   NZ_CP099533
Coordinates   3159528..3160055 (-) Length   175 a.a.
NCBI ID   WP_048489408.1    Uniprot ID   A0A0J6G4U8
Organism   Xanthomonas sacchari strain LT6-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3154528..3165055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG827_RS13245 (NG827_13230) - 3154699..3155442 (-) 744 WP_267096742.1 DUF1080 domain-containing protein -
  NG827_RS13250 (NG827_13235) - 3155486..3156058 (-) 573 WP_267096743.1 gluconate 2-dehydrogenase subunit 3 family protein -
  NG827_RS13255 (NG827_13240) - 3156058..3157743 (-) 1686 WP_267096744.1 GMC family oxidoreductase -
  NG827_RS13260 (NG827_13245) - 3157774..3158670 (-) 897 WP_267096745.1 TIM barrel protein -
  NG827_RS13265 (NG827_13250) ssb 3159528..3160055 (-) 528 WP_048489408.1 single-stranded DNA-binding protein Machinery gene
  NG827_RS13270 (NG827_13255) - 3160337..3161335 (+) 999 WP_267096746.1 polyprenyl synthetase family protein -
  NG827_RS13275 (NG827_13260) - 3161349..3161612 (+) 264 WP_017913939.1 helix-hairpin-helix domain-containing protein -
  NG827_RS13280 (NG827_13265) - 3161908..3162711 (-) 804 WP_267096747.1 dienelactone hydrolase family protein -
  NG827_RS13285 (NG827_13270) murD 3162926..3164362 (-) 1437 WP_267096748.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18720.64 Da        Isoelectric Point: 5.3243

>NTDB_id=700459 NG827_RS13265 WP_048489408.1 3159528..3160055(-) (ssb) [Xanthomonas sacchari strain LT6-2]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=700459 NG827_RS13265 WP_048489408.1 3159528..3160055(-) (ssb) [Xanthomonas sacchari strain LT6-2]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGCGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AACGCTCCGGCATGGGCGGTGGCGGCGGTGGTGGCGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAG
CAGTCCGCGCCGATGGACGACTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6G4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.211

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469
  ssb Neisseria meningitidis MC58

45.455

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457