Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NG828_RS13890 Genome accession   NZ_CP099530
Coordinates   3265001..3265528 (-) Length   175 a.a.
NCBI ID   WP_048489408.1    Uniprot ID   A0A0J6G4U8
Organism   Xanthomonas sacchari strain YT9-19-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3260001..3270528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG828_RS13870 (NG828_13835) - 3260182..3260925 (-) 744 WP_173003402.1 DUF1080 domain-containing protein -
  NG828_RS13875 (NG828_13840) - 3260969..3261541 (-) 573 WP_153751900.1 gluconate 2-dehydrogenase subunit 3 family protein -
  NG828_RS13880 (NG828_13845) - 3261541..3263226 (-) 1686 WP_043095703.1 GMC family oxidoreductase -
  NG828_RS13885 (NG828_13850) - 3263257..3264153 (-) 897 WP_267081654.1 sugar phosphate isomerase/epimerase family protein -
  NG828_RS13890 (NG828_13855) ssb 3265001..3265528 (-) 528 WP_048489408.1 single-stranded DNA-binding protein Machinery gene
  NG828_RS13895 (NG828_13860) - 3265810..3266808 (+) 999 WP_267081655.1 polyprenyl synthetase family protein -
  NG828_RS13900 (NG828_13865) - 3266822..3267085 (+) 264 WP_017913939.1 helix-hairpin-helix domain-containing protein -
  NG828_RS13905 (NG828_13870) - 3267292..3268095 (-) 804 WP_267081656.1 dienelactone hydrolase family protein -
  NG828_RS13910 (NG828_13875) murD 3268305..3269741 (-) 1437 WP_267081657.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18720.64 Da        Isoelectric Point: 5.3243

>NTDB_id=700424 NG828_RS13890 WP_048489408.1 3265001..3265528(-) (ssb) [Xanthomonas sacchari strain YT9-19-2]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=700424 NG828_RS13890 WP_048489408.1 3265001..3265528(-) (ssb) [Xanthomonas sacchari strain YT9-19-2]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGTAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGAGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AACGCTCCGGCATGGGCGGTGGCGGCGGTGGTGGCGGCGGCCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAG
CAGTCCGCGCCGATGGACGACTTCGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6G4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.211

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469
  ssb Neisseria meningitidis MC58

45.455

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457