Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFJ01_RS15915 Genome accession   NZ_CP099511
Coordinates   3316928..3317458 (-) Length   176 a.a.
NCBI ID   WP_011915524.1    Uniprot ID   -
Organism   Lelliottia amnigena strain P13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3311928..3322458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ01_RS15890 (NFJ01_15890) soxS 3312395..3312721 (+) 327 WP_011915528.1 superoxide response transcriptional regulator SoxS -
  NFJ01_RS15895 (NFJ01_15895) - 3312718..3314304 (-) 1587 WP_252686454.1 EAL domain-containing protein -
  NFJ01_RS15900 (NFJ01_15900) - 3314643..3315470 (-) 828 WP_252686456.1 sensor domain-containing diguanylate cyclase -
  NFJ01_RS15905 (NFJ01_15905) - 3315504..3316046 (-) 543 WP_252686458.1 hypothetical protein -
  NFJ01_RS15910 (NFJ01_15910) - 3316548..3316829 (+) 282 WP_059179853.1 YjcB family protein -
  NFJ01_RS15915 (NFJ01_15915) ssb 3316928..3317458 (-) 531 WP_011915524.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NFJ01_RS15920 (NFJ01_15920) uvrA 3317703..3320525 (+) 2823 WP_059179851.1 excinuclease ABC subunit UvrA -
  NFJ01_RS15925 (NFJ01_15925) - 3320528..3320881 (-) 354 WP_059179850.1 MmcQ/YjbR family DNA-binding protein -
  NFJ01_RS15930 (NFJ01_15930) aphA 3320999..3321712 (-) 714 WP_252686460.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=700316 NFJ01_RS15915 WP_011915524.1 3316928..3317458(-) (ssb) [Lelliottia amnigena strain P13]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKFTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=700316 NFJ01_RS15915 WP_011915524.1 3316928..3317458(-) (ssb) [Lelliottia amnigena strain P13]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAGCTTCGTACCCGTAAATGGACCGATCAGTCCGGTGCAGAGAAGTTCACGACGGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGTGGCGCTCCTGCAGGCGGCGGTCAGCAGCAGCAGGGCAGCTGGG
GTCAACCTCAACAGCCACAGGGCGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCA
GCACCGTCTAACGAACCCCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.667

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.477