Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LPT17_RS13185 | Genome accession | NZ_CP099502 |
| Coordinates | 2683823..2684293 (+) | Length | 156 a.a. |
| NCBI ID | WP_096002306.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain JL42 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2674582..2686734 | 2683823..2684293 | within | 0 |
Gene organization within MGE regions
Location: 2674582..2686734
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPT17_RS13090 (LPT17_13090) | - | 2674582..2675514 (-) | 933 | WP_096002309.1 | exonuclease domain-containing protein | - |
| LPT17_RS13095 (LPT17_13095) | - | 2675530..2676243 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| LPT17_RS13100 (LPT17_13100) | - | 2676206..2676356 (+) | 151 | Protein_2546 | transcriptional regulator | - |
| LPT17_RS13105 (LPT17_13105) | - | 2676331..2676405 (+) | 75 | Protein_2547 | XRE family transcriptional regulator | - |
| LPT17_RS13110 (LPT17_13110) | - | 2676421..2676636 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| LPT17_RS13115 (LPT17_13115) | - | 2676625..2676954 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| LPT17_RS13120 (LPT17_13120) | - | 2677005..2677757 (+) | 753 | WP_096002308.1 | phage antirepressor KilAC domain-containing protein | - |
| LPT17_RS13125 (LPT17_13125) | - | 2677770..2678030 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| LPT17_RS13130 (LPT17_13130) | - | 2678054..2678209 (-) | 156 | Protein_2552 | hypothetical protein | - |
| LPT17_RS13135 (LPT17_13135) | - | 2678264..2678590 (+) | 327 | WP_001025595.1 | hypothetical protein | - |
| LPT17_RS13140 (LPT17_13140) | - | 2678587..2678685 (+) | 99 | Protein_2554 | hypothetical protein | - |
| LPT17_RS13145 (LPT17_13145) | - | 2678835..2679158 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| LPT17_RS13150 (LPT17_13150) | - | 2679155..2679316 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| LPT17_RS13155 (LPT17_13155) | - | 2679411..2679713 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| LPT17_RS13160 (LPT17_13160) | - | 2679718..2679978 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| LPT17_RS13165 (LPT17_13165) | - | 2679987..2680250 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| LPT17_RS13170 (LPT17_13170) | - | 2680259..2682202 (+) | 1944 | WP_096002307.1 | AAA family ATPase | - |
| LPT17_RS13175 (LPT17_13175) | - | 2682204..2683124 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| LPT17_RS13180 (LPT17_13180) | - | 2683205..2683822 (+) | 618 | WP_078065545.1 | MBL fold metallo-hydrolase | - |
| LPT17_RS13185 (LPT17_13185) | ssbA | 2683823..2684293 (+) | 471 | WP_096002306.1 | single-stranded DNA-binding protein | Machinery gene |
| LPT17_RS13190 (LPT17_13190) | - | 2684323..2685207 (+) | 885 | WP_158139158.1 | DnaD domain protein | - |
| LPT17_RS13195 (LPT17_13195) | - | 2685214..2685432 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| LPT17_RS13200 (LPT17_13200) | - | 2685441..2685844 (+) | 404 | Protein_2566 | RusA family crossover junction endodeoxyribonuclease | - |
| LPT17_RS13205 (LPT17_13205) | - | 2685857..2686225 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| LPT17_RS13210 (LPT17_13210) | - | 2686229..2686471 (+) | 243 | WP_096002304.1 | phi PVL orf 51-like protein | - |
| LPT17_RS13215 (LPT17_13215) | - | 2686486..2686734 (+) | 249 | WP_096002303.1 | DUF1024 family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17657.52 Da Isoelectric Point: 5.2672
>NTDB_id=700174 LPT17_RS13185 WP_096002306.1 2683823..2684293(+) (ssbA) [Staphylococcus aureus strain JL42]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=700174 LPT17_RS13185 WP_096002306.1 2683823..2684293(+) (ssbA) [Staphylococcus aureus strain JL42]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.802 |
100 |
0.622 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |