Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SA27298_RS07580 Genome accession   NZ_AP018548
Coordinates   1554315..1556291 (-) Length   658 a.a.
NCBI ID   WP_018543581.1    Uniprot ID   A0AAN4P8U3
Organism   Streptococcus anginosus strain CCUG 27928     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549315..1561291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS07565 (SA27298_1545) amiD 1549341..1550267 (-) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  SA27298_RS07570 (SA27298_1546) amiC 1550267..1551763 (-) 1497 WP_003031736.1 ABC transporter permease Regulator
  SA27298_RS07575 (SA27298_1547) amiA3 1552139..1554118 (-) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator
  SA27298_RS07580 (SA27298_1548) amiA3 1554315..1556291 (-) 1977 WP_018543581.1 peptide ABC transporter substrate-binding protein Regulator
  SA27298_RS07585 (SA27298_1549) - 1556458..1557141 (-) 684 WP_026248186.1 phenylalanine--tRNA ligase beta subunit-related protein -
  SA27298_RS07590 (SA27298_1550) - 1557375..1558985 (-) 1611 WP_003031779.1 CTP synthase -
  SA27298_RS07595 (SA27298_1551) rpoE 1559168..1559755 (-) 588 WP_003031757.1 DNA-directed RNA polymerase subunit delta -
  SA27298_RS07600 (SA27298_1552) tig 1559992..1561275 (-) 1284 WP_003031722.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72407.95 Da        Isoelectric Point: 8.5876

>NTDB_id=69995 SA27298_RS07580 WP_018543581.1 1554315..1556291(-) (amiA3) [Streptococcus anginosus strain CCUG 27928]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKAKFAKAKEALQAQGVKFPIHLDVPTVETSKNYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWNPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRLQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKVESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=69995 SA27298_RS07580 WP_018543581.1 1554315..1556291(-) (amiA3) [Streptococcus anginosus strain CCUG 27928]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCATACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCAAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAATGGCTTGTACAATCCAACAAAAGCAAAAGCAAAATTTGCAAAAGCAAAAGAAGCTTTGCAAGC
TCAAGGTGTGAAATTCCCAATCCATTTAGATGTTCCTACTGTAGAAACTTCTAAGAACTATGTTGCTCGTATGCAATCTT
TGAAACAGTCTGTTGAAAAAGTACTTGGTAAAGAAAATGTTGTCATGGACTTGAACATGATGTCAGAAGATGACTTTAAC
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATCTCAGGCGCTGTTGGTTGGAATCCCGACTATCA
AGATCCATCTACTTATCTTGACATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACTGGTGCAGGAACATTTGTGTCACGTCTTCAACCATTCTCAGGTGCGTTTGCACAAACAGGTAGCAAAGGTAGCTCAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGTTGAATCTAACAAAAAAGCTCAAGACGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.34

100

0.644
  amiA3 Streptococcus thermophilus LMG 18311

64.188

100

0.643
  amiA Streptococcus salivarius strain HSISS4

63.222

100

0.632

Multiple sequence alignment