Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SA27298_RS07565 Genome accession   NZ_AP018548
Coordinates   1549341..1550267 (-) Length   308 a.a.
NCBI ID   WP_003031796.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1544341..1555267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS07545 (SA27298_1541) - 1545325..1546290 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  SA27298_RS07550 (SA27298_1542) - 1546364..1547188 (-) 825 WP_003031797.1 Cof-type HAD-IIB family hydrolase -
  SA27298_RS07555 (SA27298_1543) amiF 1547331..1548254 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SA27298_RS07560 (SA27298_1544) amiE 1548265..1549332 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  SA27298_RS07565 (SA27298_1545) amiD 1549341..1550267 (-) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  SA27298_RS07570 (SA27298_1546) amiC 1550267..1551763 (-) 1497 WP_003031736.1 ABC transporter permease Regulator
  SA27298_RS07575 (SA27298_1547) amiA3 1552139..1554118 (-) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34461.48 Da        Isoelectric Point: 9.8589

>NTDB_id=69992 SA27298_RS07565 WP_003031796.1 1549341..1550267(-) (amiD) [Streptococcus anginosus strain CCUG 27928]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIAKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=69992 SA27298_RS07565 WP_003031796.1 1549341..1550267(-) (amiD) [Streptococcus anginosus strain CCUG 27928]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATCGTCATTGTC
TTGACATACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACATTGGGAACGCCAACGCTTAAAA
TTATTGCGAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTTACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCTTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment