Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NF199_RS19450 Genome accession   NZ_CP099460
Coordinates   3912161..3912679 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3907161..3917679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS19420 - 3908362..3908742 (-) 381 WP_265606050.1 VOC family protein -
  NF199_RS19425 - 3908799..3909737 (-) 939 WP_032875335.1 LacI family DNA-binding transcriptional regulator -
  NF199_RS19430 xth 3909800..3910558 (-) 759 WP_032875332.1 exodeoxyribonuclease III -
  NF199_RS19435 - 3910555..3911112 (-) 558 WP_032875329.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NF199_RS19440 - 3911109..3911690 (-) 582 WP_032875326.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  NF199_RS19445 rpsR 3911878..3912117 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  NF199_RS19450 ssbA 3912161..3912679 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  NF199_RS19455 rpsF 3912719..3913006 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  NF199_RS19460 ychF 3913118..3914218 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  NF199_RS19465 - 3914345..3916348 (-) 2004 WP_265606051.1 molybdopterin-dependent oxidoreductase -
  NF199_RS19470 - 3916395..3916601 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=699817 NF199_RS19450 WP_007615071.1 3912161..3912679(-) (ssbA) [Bacillus velezensis strain E]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=699817 NF199_RS19450 WP_007615071.1 3912161..3912679(-) (ssbA) [Bacillus velezensis strain E]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372