Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SA27298_RS04480 Genome accession   NZ_AP018548
Coordinates   914708..915397 (+) Length   229 a.a.
NCBI ID   WP_003024592.1    Uniprot ID   A0A0P0N8H2
Organism   Streptococcus anginosus strain CCUG 27928     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 909708..920397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS04460 (SA27298_0911) - 910379..911935 (-) 1557 WP_003031372.1 ClC family H(+)/Cl(-) exchange transporter -
  SA27298_RS04465 (SA27298_0912) - 912163..912891 (-) 729 WP_003024584.1 ABC transporter permease -
  SA27298_RS04470 (SA27298_0913) - 912888..913628 (-) 741 WP_003024586.1 ABC transporter permease -
  SA27298_RS04475 (SA27298_0914) - 913628..914536 (-) 909 WP_003031366.1 ATP-binding cassette domain-containing protein -
  SA27298_RS04480 (SA27298_0915) scnR 914708..915397 (+) 690 WP_003024592.1 response regulator transcription factor Regulator
  SA27298_RS04485 (SA27298_0916) scnK 915398..916708 (+) 1311 WP_003024595.1 HAMP domain-containing sensor histidine kinase Regulator
  SA27298_RS04490 (SA27298_0917) - 917005..918378 (-) 1374 WP_003031379.1 FAD-dependent oxidoreductase -
  SA27298_RS04495 (SA27298_0918) - 918680..919609 (+) 930 WP_026248161.1 FAD:protein FMN transferase -
  SA27298_RS04500 (SA27298_0919) - 919629..920237 (+) 609 WP_003031350.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26267.57 Da        Isoelectric Point: 6.5039

>NTDB_id=69981 SA27298_RS04480 WP_003024592.1 914708..915397(+) (scnR) [Streptococcus anginosus strain CCUG 27928]
MNYKEKKILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=69981 SA27298_RS04480 WP_003024592.1 914708..915397(+) (scnR) [Streptococcus anginosus strain CCUG 27928]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAATCCAGAAATTTTAGAAATGGTGCAAGAATCATTGAACAT
TGCTGGTTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGTTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTGCTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTTACTTTTGACCAACTCTTAGAAAAAGTCTGGGGCTTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATCGAAGCCAATCCATCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0N8H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

87.773

100

0.878
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376

Multiple sequence alignment