Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   SA27298_RS04485 Genome accession   NZ_AP018548
Coordinates   915398..916708 (+) Length   436 a.a.
NCBI ID   WP_003024595.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 910398..921708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS04465 (SA27298_0912) - 912163..912891 (-) 729 WP_003024584.1 ABC transporter permease -
  SA27298_RS04470 (SA27298_0913) - 912888..913628 (-) 741 WP_003024586.1 ABC transporter permease -
  SA27298_RS04475 (SA27298_0914) - 913628..914536 (-) 909 WP_003031366.1 ATP-binding cassette domain-containing protein -
  SA27298_RS04480 (SA27298_0915) scnR 914708..915397 (+) 690 WP_003024592.1 response regulator transcription factor Regulator
  SA27298_RS04485 (SA27298_0916) scnK 915398..916708 (+) 1311 WP_003024595.1 HAMP domain-containing sensor histidine kinase Regulator
  SA27298_RS04490 (SA27298_0917) - 917005..918378 (-) 1374 WP_003031379.1 FAD-dependent oxidoreductase -
  SA27298_RS04495 (SA27298_0918) - 918680..919609 (+) 930 WP_026248161.1 FAD:protein FMN transferase -
  SA27298_RS04500 (SA27298_0919) - 919629..920237 (+) 609 WP_003031350.1 NADPH-dependent FMN reductase -
  SA27298_RS04505 (SA27298_0920) - 920256..921500 (+) 1245 WP_003031357.1 NAD(P)H-dependent oxidoreductase -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 49993.84 Da        Isoelectric Point: 8.7729

>NTDB_id=69982 SA27298_RS04485 WP_003024595.1 915398..916708(+) (scnK) [Streptococcus anginosus strain CCUG 27928]
MDTVKFFTKLLTRYVLLLLALIIGLVFVYGLVFSSYFSFYGKEKPELLYTKIAQSSQQNNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPKGLKRHYTNTDMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMEPIITAVTSLSQGQNIALNEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKHHSEFSSLDLVAVLRTVIADILNNYETIT
LHFDLPTEAVLVKGEVTLLERAFRNLLLNSIIHSGSNQIDLTYQLSDNKVLIIIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNQPGLKVIISLPLVKD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=69982 SA27298_RS04485 WP_003024595.1 915398..916708(+) (scnK) [Streptococcus anginosus strain CCUG 27928]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTACTCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCATCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAACAGAATAATTTTAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTAAAGGACTCAAAAGGCATTATACGAATACTGATATGGT
TAAATTTTCACGCTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGAGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCTTTAGCAAAATTTAATTTCTATGCTAATACGCAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGTTGCGCATTAAAAAGGAGATGGAGCCGAT
TATTACTGCTGTCACTTCTTTGTCTCAAGGTCAAAATATCGCTCTTAATGAAAAGGGAAATTTCTCTGAAATTAAGACAG
CTCTCAATGAAACCTCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGCTAGAGCAGCAATATGGTAAAGGAAAGCAGACGGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAATCAAAAGCATCACT
CCGAATTTTCGAGTCTTGATTTGGTTGCAGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTACCGAGGCAGTGTTGGTAAAAGGAGAGGTAACTTTACTAGAAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATCATACACAGCGGTTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCATCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCGACTAATTATGAATCACATGGTATG
GGAACGGTTATCACTAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTAGACAATCAGCCAGGCTTAAAAGT
CATCATTTCTTTACCTTTAGTAAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

83.028

100

0.83


Multiple sequence alignment