Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FJI53_RS05875 Genome accession   NZ_AP023237
Coordinates   1205236..1205973 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain F070     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200236..1210973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJI53_RS05845 yfiL 1200394..1200759 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FJI53_RS05850 aroF 1200969..1202039 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FJI53_RS05855 tyrA 1202050..1203171 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FJI53_RS05860 pheA 1203214..1204374 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  FJI53_RS05865 pheL 1204473..1204520 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  FJI53_RS05870 raiA 1204624..1204965 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FJI53_RS05875 comL 1205236..1205973 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FJI53_RS05880 rluD 1206108..1207088 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FJI53_RS05885 yfiH 1207085..1207816 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  FJI53_RS05890 clpC 1207946..1210519 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=69961 FJI53_RS05875 WP_000197686.1 1205236..1205973(-) (comL) [Escherichia coli strain F070]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=69961 FJI53_RS05875 WP_000197686.1 1205236..1205973(-) (comL) [Escherichia coli strain F070]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment