Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SA27298_RS01250 Genome accession   NZ_AP018548
Coordinates   246742..247233 (+) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus anginosus strain CCUG 27928     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 241742..252233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS01220 (SA27298_0248) - 242411..243004 (+) 594 WP_003030523.1 histidine phosphatase family protein -
  SA27298_RS01225 (SA27298_0249) - 243005..243607 (+) 603 WP_003030549.1 histidine phosphatase family protein -
  SA27298_RS01230 (SA27298_0250) - 243842..244252 (-) 411 WP_018543672.1 hypothetical protein -
  SA27298_RS01235 (SA27298_0251) - 244227..245132 (-) 906 WP_003030515.1 phosphodiester glycosidase family protein -
  SA27298_RS01240 (SA27298_0252) - 245129..246172 (-) 1044 WP_018543671.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SA27298_RS01245 (SA27298_0253) rpsF 246440..246730 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  SA27298_RS01250 (SA27298_0254) ssb 246742..247233 (+) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  SA27298_RS01255 (SA27298_0255) rpsR 247270..247509 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SA27298_RS01260 (SA27298_0256) - 247689..248366 (-) 678 WP_003030531.1 DUF1129 family protein -
  SA27298_RS01265 (SA27298_0257) - 248382..249326 (-) 945 WP_003030529.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=69953 SA27298_RS01250 WP_003030533.1 246742..247233(+) (ssb) [Streptococcus anginosus strain CCUG 27928]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=69953 SA27298_RS01250 WP_003030533.1 246742..247233(+) (ssb) [Streptococcus anginosus strain CCUG 27928]
ATGATAAATAACGTTGTACTTGTGGGTCGTATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATCAACGTTGTGATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCCCTTATCGGAATTACTGGTCGGATTCAAACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTGGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGGAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGATATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment