Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP50_RS25130 Genome accession   NZ_CP115245
Coordinates   5415396..5415725 (-) Length   109 a.a.
NCBI ID   WP_023084085.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F041     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5410396..5420725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP50_RS25115 (PCP50_25110) uvrB 5411783..5413795 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP50_RS25120 (PCP50_25115) - 5413983..5415179 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP50_RS25130 (PCP50_25125) comEA/comE1 5415396..5415725 (-) 330 WP_023084085.1 ComEA family DNA-binding protein Machinery gene
  PCP50_RS25135 (PCP50_25130) - 5415916..5417913 (-) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  PCP50_RS25140 (PCP50_25135) - 5418111..5419148 (-) 1038 WP_003452706.1 MraY family glycosyltransferase -
  PCP50_RS25145 (PCP50_25140) - 5419148..5420110 (-) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11339.25 Da        Isoelectric Point: 8.0459

>NTDB_id=698455 PCP50_RS25130 WP_023084085.1 5415396..5415725(-) (comEA/comE1) [Pseudomonas aeruginosa strain F041]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=698455 PCP50_RS25130 WP_023084085.1 5415396..5415725(-) (comEA/comE1) [Pseudomonas aeruginosa strain F041]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385