NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	NF323_RS12320	Genome accession	NZ_CP098820
Coordinates	2517276..2517785 (-)	Length	169 a.a.
NCBI ID	WP_023349922.1	Uniprot ID	A0A7X9WHU6
Organism	Staphylococcus capitis strain XWZ
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2512276..2522785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF323_RS12280 (NF323_12285)	-	2513214..2513468 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
NF323_RS12285 (NF323_12290)	-	2513770..2514030 (+)	261	WP_002434577.1	hypothetical protein	-
NF323_RS12290 (NF323_12295)	-	2514034..2514783 (-)	750	WP_030061295.1	amidohydrolase family protein	-
NF323_RS12295 (NF323_12300)	-	2514940..2515197 (+)	258	WP_030061297.1	helix-turn-helix transcriptional regulator	-
NF323_RS12300 (NF323_12305)	-	2515268..2515621 (-)	354	WP_023349918.1	hypothetical protein	-
NF323_RS12305 (NF323_12310)	-	2515705..2516268 (-)	564	WP_030061299.1	DUF5067 domain-containing protein	-
NF323_RS12310 (NF323_12315)	-	2516405..2516659 (-)	255	WP_096389425.1	hypothetical protein	-
NF323_RS12315 (NF323_12320)	rpsR	2516987..2517229 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
NF323_RS12320 (NF323_12325)	ssbA	2517276..2517785 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
NF323_RS12325 (NF323_12330)	rpsF	2517807..2518103 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
NF323_RS12330 (NF323_12335)	-	2518236..2518406 (-)	171	Protein_2382	recombinase family protein	-
NF323_RS12335 (NF323_12340)	-	2518516..2519262 (-)	747	WP_002434512.1	HAD family hydrolase	-
NF323_RS12340 (NF323_12345)	-	2519266..2519682 (-)	417	WP_227489929.1	NUDIX domain-containing protein	-
NF323_RS12345 (NF323_12350)	-	2519679..2520569 (-)	891	WP_030061331.1	DMT family transporter	-
NF323_RS12350 (NF323_12355)	-	2520569..2520952 (-)	384	WP_030061333.1	NUDIX domain-containing protein	-
NF323_RS12355 (NF323_12360)	-	2520965..2521642 (-)	678	WP_030061334.1	hypothetical protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18672.18 Da Isoelectric Point: 4.5778

                                >NTDB_id=698200 NF323_RS12320 WP_023349922.1 2517276..2517785(-) (ssbA) [Staphylococcus capitis strain XWZ]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=698200 NF323_RS12320 WP_023349922.1 2517276..2517785(-) (ssbA) [Staphylococcus capitis strain XWZ]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT

TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA

TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC

GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0698200