NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	NF322_RS11565	Genome accession	NZ_CP098816
Coordinates	2390539..2391048 (-)	Length	169 a.a.
NCBI ID	WP_023349922.1	Uniprot ID	A0A7X9WHU6
Organism	Staphylococcus capitis strain LZD8_nano
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2385539..2396048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF322_RS11525 (NF322_11535)	-	2386477..2386731 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
NF322_RS11530 (NF322_11540)	-	2387033..2387293 (+)	261	WP_002434577.1	hypothetical protein	-
NF322_RS11535 (NF322_11545)	-	2387297..2388046 (-)	750	WP_030061295.1	amidohydrolase family protein	-
NF322_RS11540 (NF322_11550)	-	2388203..2388460 (+)	258	WP_030061297.1	helix-turn-helix transcriptional regulator	-
NF322_RS11545 (NF322_11555)	-	2388531..2388884 (-)	354	WP_023349918.1	hypothetical protein	-
NF322_RS11550 (NF322_11560)	-	2388968..2389531 (-)	564	WP_030061299.1	DUF5067 domain-containing protein	-
NF322_RS11555 (NF322_11565)	-	2389668..2389922 (-)	255	WP_096389425.1	hypothetical protein	-
NF322_RS11560 (NF322_11570)	rpsR	2390250..2390492 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
NF322_RS11565 (NF322_11575)	ssbA	2390539..2391048 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
NF322_RS11570 (NF322_11580)	rpsF	2391070..2391366 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
NF322_RS11575 (NF322_11585)	-	2391499..2391669 (-)	171	Protein_2231	recombinase family protein	-
NF322_RS11580 (NF322_11590)	-	2391779..2392525 (-)	747	WP_002434512.1	HAD family hydrolase	-
NF322_RS11585 (NF322_11595)	-	2392529..2392945 (-)	417	WP_227489929.1	NUDIX domain-containing protein	-
NF322_RS11590 (NF322_11600)	-	2392942..2393832 (-)	891	WP_030061331.1	DMT family transporter	-
NF322_RS11595 (NF322_11605)	-	2393832..2394215 (-)	384	WP_030061333.1	NUDIX domain-containing protein	-
NF322_RS11600 (NF322_11610)	-	2394228..2394905 (-)	678	WP_030061334.1	hypothetical protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18672.18 Da Isoelectric Point: 4.5778

                                >NTDB_id=698165 NF322_RS11565 WP_023349922.1 2390539..2391048(-) (ssbA) [Staphylococcus capitis strain LZD8_nano]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=698165 NF322_RS11565 WP_023349922.1 2390539..2391048(-) (ssbA) [Staphylococcus capitis strain LZD8_nano]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT

TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA

TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC

GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0698165