Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NE851_RS20885 Genome accession   NZ_CP098803
Coordinates   2461227..2461745 (+) Length   172 a.a.
NCBI ID   WP_047615135.1    Uniprot ID   A0A3S0SMW1
Organism   Rhizobium anhuiense bv. trifolii strain T24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2456227..2466745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE851_RS20870 (NE851_20840) - 2456733..2457539 (-) 807 WP_028756886.1 DUF72 domain-containing protein -
  NE851_RS20875 (NE851_20845) - 2457564..2458025 (-) 462 WP_028756885.1 GNAT family N-acetyltransferase -
  NE851_RS20880 (NE851_20850) uvrA 2458022..2460943 (-) 2922 WP_063475577.1 excinuclease ABC subunit UvrA -
  NE851_RS20885 (NE851_20855) ssb 2461227..2461745 (+) 519 WP_047615135.1 single-stranded DNA-binding protein Machinery gene
  NE851_RS20890 (NE851_20860) - 2461833..2462480 (-) 648 WP_018242015.1 MarC family protein -
  NE851_RS20895 (NE851_20865) gyrA 2462718..2465540 (+) 2823 WP_028756877.1 DNA gyrase subunit A -
  NE851_RS20900 - 2465726..2465860 (-) 135 WP_018445350.1 hypothetical protein -
  NE851_RS20905 (NE851_20870) - 2465897..2466052 (-) 156 WP_164735989.1 hypothetical protein -
  NE851_RS20910 (NE851_20875) - 2466195..2466365 (-) 171 WP_244604870.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18390.10 Da        Isoelectric Point: 5.3093

>NTDB_id=698102 NE851_RS20885 WP_047615135.1 2461227..2461745(+) (ssb) [Rhizobium anhuiense bv. trifolii strain T24]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSGGNDYGDDYGAPAPSSSPSRGGAGGG
NFSRDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=698102 NE851_RS20885 WP_047615135.1 2461227..2461745(+) (ssb) [Rhizobium anhuiense bv. trifolii strain T24]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTTGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACAGCACCGAAGTGGTGCTACAGGGCTT
CAGTTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGTGCCAGCTCCGGCTTCGGCGGCGGCCGCGGCGGCA
GCGGCGGCAACGATTATGGCGACGACTACGGCGCGCCGGCTCCCTCTTCATCCCCGAGCCGCGGCGGCGCTGGCGGCGGC
AATTTCTCGCGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0SMW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.597

100

0.517
  ssb Vibrio cholerae strain A1552

49.133

100

0.494
  ssb Neisseria meningitidis MC58

37.989

100

0.395
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.39