Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   NE421_RS18130 Genome accession   NZ_CP098791
Coordinates   3808445..3809185 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3803445..3814185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS18110 (NE421_18110) aroB 3803987..3805069 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  NE421_RS18115 (NE421_18115) aroK 3805098..3805667 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NE421_RS18120 (NE421_18120) pilQ 3805679..3807844 (-) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  NE421_RS18125 (NE421_18125) pilP 3807907..3808434 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NE421_RS18130 (NE421_18130) pilO 3808445..3809185 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NE421_RS18135 (NE421_18135) pilN 3809182..3809823 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  NE421_RS18140 (NE421_18140) pilM 3809823..3810881 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NE421_RS18145 (NE421_18145) ponA 3811044..3813599 (+) 2556 WP_031965526.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=698046 NE421_RS18130 WP_000076101.1 3808445..3809185(-) (pilO) [Acinetobacter baumannii strain 280820]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=698046 NE421_RS18130 WP_000076101.1 3808445..3809185(-) (pilO) [Acinetobacter baumannii strain 280820]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683