Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NE421_RS18135 Genome accession   NZ_CP098791
Coordinates   3809182..3809823 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3804182..3814823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS18115 (NE421_18115) aroK 3805098..3805667 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NE421_RS18120 (NE421_18120) pilQ 3805679..3807844 (-) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  NE421_RS18125 (NE421_18125) pilP 3807907..3808434 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NE421_RS18130 (NE421_18130) pilO 3808445..3809185 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NE421_RS18135 (NE421_18135) pilN 3809182..3809823 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  NE421_RS18140 (NE421_18140) pilM 3809823..3810881 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NE421_RS18145 (NE421_18145) ponA 3811044..3813599 (+) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  NE421_RS18150 (NE421_18150) - 3813617..3814441 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  NE421_RS18155 (NE421_18155) - 3814444..3814776 (-) 333 WP_031965525.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=698047 NE421_RS18135 WP_000201227.1 3809182..3809823(-) (pilN) [Acinetobacter baumannii strain 280820]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=698047 NE421_RS18135 WP_000201227.1 3809182..3809823(-) (pilN) [Acinetobacter baumannii strain 280820]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709