Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NE421_RS18125 Genome accession   NZ_CP098791
Coordinates   3807907..3808434 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3802907..3813434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS18105 (NE421_18105) - 3803096..3803971 (-) 876 WP_000218801.1 hypothetical protein -
  NE421_RS18110 (NE421_18110) aroB 3803987..3805069 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  NE421_RS18115 (NE421_18115) aroK 3805098..3805667 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NE421_RS18120 (NE421_18120) pilQ 3805679..3807844 (-) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  NE421_RS18125 (NE421_18125) pilP 3807907..3808434 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NE421_RS18130 (NE421_18130) pilO 3808445..3809185 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NE421_RS18135 (NE421_18135) pilN 3809182..3809823 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  NE421_RS18140 (NE421_18140) pilM 3809823..3810881 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=698045 NE421_RS18125 WP_000695065.1 3807907..3808434(-) (pilP) [Acinetobacter baumannii strain 280820]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=698045 NE421_RS18125 WP_000695065.1 3807907..3808434(-) (pilP) [Acinetobacter baumannii strain 280820]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCTTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCAGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714