Detailed information
Bioinformatically predicted
Overview
| Name | comEC | Type | Machinery gene |
| Locus tag | LLCC_RS05740 | Genome accession | NZ_AP018499 |
| Coordinates | 1105629..1106900 (+) | Length | 423 a.a. |
| NCBI ID | WP_324187043.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain C4 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1068920..1148291 | 1105629..1106900 | within | 0 |
| IS/Tn | 1107483..1108373 | 1105629..1106900 | flank | 583 |
Gene organization within MGE regions
Location: 1068920..1148291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLCC_RS05585 (LLCC_1188) | - | 1070394..1071932 (-) | 1539 | Protein_1065 | M13-type metalloendopeptidase | - |
| LLCC_RS05590 (LLCC_1189) | - | 1072089..1072763 (-) | 675 | WP_015082761.1 | helix-turn-helix domain-containing protein | - |
| LLCC_RS05595 (LLCC_1190) | - | 1072999..1073598 (+) | 600 | WP_011676808.1 | transcriptional regulator | - |
| LLCC_RS05600 (LLCC_1191) | rpoB | 1073867..1077457 (+) | 3591 | WP_126354712.1 | DNA-directed RNA polymerase subunit beta | - |
| LLCC_RS05605 (LLCC_1192) | rpoC | 1077565..1081188 (+) | 3624 | WP_164717651.1 | DNA-directed RNA polymerase subunit beta' | - |
| LLCC_RS05610 (LLCC_1193) | - | 1081369..1082220 (+) | 852 | WP_308167263.1 | diacylglycerol/lipid kinase family protein | - |
| LLCC_RS05615 (LLCC_1194) | - | 1082366..1083052 (+) | 687 | WP_014572148.1 | amino acid ABC transporter permease | - |
| LLCC_RS05620 (LLCC_1195) | - | 1083052..1083786 (+) | 735 | WP_011676803.1 | amino acid ABC transporter ATP-binding protein | - |
| LLCC_RS05625 (LLCC_1196) | mecA | 1083915..1084616 (+) | 702 | WP_011676802.1 | adaptor protein MecA | Regulator |
| LLCC_RS05630 (LLCC_1197) | - | 1084619..1085944 (+) | 1326 | WP_126354714.1 | glycosyltransferase family 4 protein | - |
| LLCC_RS05635 (LLCC_1198) | sufC | 1086120..1086890 (+) | 771 | WP_011676800.1 | Fe-S cluster assembly ATPase SufC | - |
| LLCC_RS05640 (LLCC_1199) | sufD | 1087030..1088286 (+) | 1257 | WP_021165660.1 | Fe-S cluster assembly protein SufD | - |
| LLCC_RS05645 (LLCC_1200) | - | 1088286..1089506 (+) | 1221 | WP_021213770.1 | cysteine desulfurase | - |
| LLCC_RS05650 (LLCC_1201) | - | 1089508..1089990 (+) | 483 | WP_031286519.1 | hypothetical protein | - |
| LLCC_RS05655 (LLCC_1202) | sufU | 1090124..1090582 (+) | 459 | WP_011676796.1 | Fe-S cluster assembly sulfur transfer protein SufU | - |
| LLCC_RS05660 (LLCC_1203) | sufB | 1090678..1092090 (+) | 1413 | WP_004255207.1 | Fe-S cluster assembly protein SufB | - |
| LLCC_RS05665 (LLCC_1204) | - | 1092437..1092727 (+) | 291 | WP_011676794.1 | WXG100 family type VII secretion target | - |
| LLCC_RS05670 (LLCC_1205) | essA | 1092835..1093305 (+) | 471 | WP_011835707.1 | type VII secretion protein EssA | - |
| LLCC_RS05675 (LLCC_1206) | - | 1093427..1093672 (+) | 246 | WP_021165657.1 | hypothetical protein | - |
| LLCC_RS05680 (LLCC_1207) | esaA | 1093735..1095735 (+) | 2001 | WP_061777933.1 | type VII secretion protein EsaA | - |
| LLCC_RS05685 (LLCC_1208) | - | 1095736..1096626 (-) | 891 | WP_061777934.1 | IS982 family transposase | - |
| LLCC_RS05690 (LLCC_1209) | - | 1096837..1097406 (+) | 570 | WP_011676781.1 | biotin transporter BioY | - |
| LLCC_RS05695 (LLCC_1210) | - | 1097412..1098383 (+) | 972 | WP_015082750.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| LLCC_RS05700 (LLCC_1211) | - | 1098404..1098706 (+) | 303 | WP_011676779.1 | CHY zinc finger protein | - |
| LLCC_RS05705 (LLCC_1212) | tenA | 1098925..1099581 (+) | 657 | WP_011835701.1 | thiaminase II | - |
| LLCC_RS05710 (LLCC_1213) | - | 1099969..1101147 (+) | 1179 | WP_011676777.1 | SLC13 family permease | - |
| LLCC_RS05715 (LLCC_1214) | - | 1101320..1101880 (+) | 561 | WP_032950467.1 | GNAT family N-acetyltransferase | - |
| LLCC_RS05720 | - | 1101996..1102394 (+) | 399 | WP_061777935.1 | hypothetical protein | - |
| LLCC_RS05725 (LLCC_1215) | - | 1102500..1103432 (+) | 933 | WP_014572202.1 | ABC transporter ATP-binding protein | - |
| LLCC_RS05730 (LLCC_1216) | - | 1103429..1104790 (+) | 1362 | WP_061777936.1 | ABC transporter permease | - |
| LLCC_RS05735 (LLCC_1217) | comEA | 1104921..1105403 (+) | 483 | WP_232035111.1 | SLBB domain-containing protein | Machinery gene |
| LLCC_RS14110 | comEA | 1105400..1105501 (+) | 102 | WP_228764031.1 | ComEA family DNA-binding protein | Machinery gene |
| LLCC_RS05740 (LLCC_1218) | comEC | 1105629..1106900 (+) | 1272 | WP_324187043.1 | ComEC/Rec2 family competence protein | Machinery gene |
| LLCC_RS14115 (LLCC_1219) | comEC | 1106897..1107406 (+) | 510 | WP_232035112.1 | MBL fold metallo-hydrolase | Machinery gene |
| LLCC_RS05745 (LLCC_1220) | - | 1107483..1108373 (+) | 891 | WP_126354716.1 | IS982-like element IS982B family transposase | - |
| LLCC_RS05750 (LLCC_1221) | - | 1108394..1108699 (+) | 306 | Protein_1100 | ComEC/Rec2 family competence protein | - |
| LLCC_RS05755 (LLCC_1222) | - | 1108983..1109759 (+) | 777 | WP_061778314.1 | alpha/beta hydrolase | - |
| LLCC_RS05760 (LLCC_1223) | - | 1109942..1110157 (+) | 216 | WP_014572212.1 | F0F1 ATP synthase subunit C | - |
| LLCC_RS05765 (LLCC_1224) | atpB | 1110204..1110917 (+) | 714 | WP_004255255.1 | F0F1 ATP synthase subunit A | - |
| LLCC_RS05770 (LLCC_1225) | atpF | 1110932..1111438 (+) | 507 | WP_010906128.1 | F0F1 ATP synthase subunit B | - |
| LLCC_RS05775 (LLCC_1226) | - | 1111440..1111967 (+) | 528 | WP_014572213.1 | F0F1 ATP synthase subunit delta | - |
| LLCC_RS05780 (LLCC_1227) | atpA | 1112155..1113657 (+) | 1503 | WP_061778315.1 | F0F1 ATP synthase subunit alpha | - |
| LLCC_RS05785 (LLCC_1228) | - | 1113673..1114542 (+) | 870 | WP_021165644.1 | F0F1 ATP synthase subunit gamma | - |
| LLCC_RS05790 (LLCC_1229) | atpD | 1114714..1116123 (+) | 1410 | WP_021165643.1 | F0F1 ATP synthase subunit beta | - |
| LLCC_RS05795 (LLCC_1230) | - | 1116308..1116733 (+) | 426 | WP_011676764.1 | F0F1 ATP synthase subunit epsilon | - |
| LLCC_RS05800 (LLCC_1231) | - | 1116849..1117496 (+) | 648 | WP_014572215.1 | hypothetical protein | - |
| LLCC_RS05805 (LLCC_1232) | - | 1117497..1118024 (+) | 528 | WP_232035113.1 | hypothetical protein | - |
| LLCC_RS14120 (LLCC_1233) | - | 1118037..1118435 (+) | 399 | WP_232035114.1 | hypothetical protein | - |
| LLCC_RS05810 (LLCC_1235) | - | 1118472..1119583 (+) | 1112 | WP_126354718.1 | IS3-like element IS981 family transposase | - |
| LLCC_RS05815 (LLCC_1236) | - | 1119640..1119888 (+) | 249 | WP_061777790.1 | hypothetical protein | - |
| LLCC_RS05820 (LLCC_1237) | - | 1120011..1120544 (+) | 534 | WP_126354720.1 | hypothetical protein | - |
| LLCC_RS05825 (LLCC_1238) | - | 1120601..1121344 (-) | 744 | WP_011676756.1 | amino acid ABC transporter ATP-binding protein | - |
| LLCC_RS05830 (LLCC_1239) | - | 1121367..1123511 (-) | 2145 | WP_011676755.1 | amino acid ABC transporter substrate-binding protein/permease | - |
| LLCC_RS05835 (LLCC_1240) | - | 1123880..1124536 (+) | 657 | WP_014572220.1 | VTT domain-containing protein | - |
| LLCC_RS05840 (LLCC_1241) | - | 1124714..1125574 (+) | 861 | WP_021165626.1 | shikimate dehydrogenase | - |
| LLCC_RS05845 (LLCC_1242) | aroB | 1125571..1126641 (+) | 1071 | WP_061777788.1 | 3-dehydroquinate synthase | - |
| LLCC_RS05850 (LLCC_1243) | - | 1126755..1127678 (+) | 924 | WP_061777787.1 | DMT family transporter | - |
| LLCC_RS05855 (LLCC_1244) | - | 1128050..1128649 (+) | 600 | WP_014572223.1 | DUF1054 domain-containing protein | - |
| LLCC_RS05860 (LLCC_1245) | - | 1128654..1129250 (+) | 597 | WP_021165625.1 | HAD-IA family hydrolase | - |
| LLCC_RS05865 (LLCC_1246) | aroC | 1129281..1130447 (+) | 1167 | WP_011676748.1 | chorismate synthase | - |
| LLCC_RS05870 (LLCC_1247) | - | 1130569..1130925 (+) | 357 | WP_061777786.1 | YxeA family protein | - |
| LLCC_RS05875 (LLCC_1249) | - | 1131120..1131899 (+) | 780 | WP_021165624.1 | ABC transporter ATP-binding protein | - |
| LLCC_RS05880 (LLCC_1250) | - | 1131892..1133901 (+) | 2010 | WP_032950486.1 | ABC transporter permease | - |
| LLCC_RS05885 (LLCC_1251) | - | 1133922..1134869 (-) | 948 | WP_003130410.1 | IS30 family transposase | - |
| LLCC_RS05890 (LLCC_1252) | - | 1135168..1136232 (+) | 1065 | WP_011676743.1 | VanZ family protein | - |
| LLCC_RS05895 (LLCC_1253) | - | 1136235..1136906 (+) | 672 | WP_021165622.1 | response regulator transcription factor | - |
| LLCC_RS14690 | - | 1136893..1137767 (+) | 875 | Protein_1131 | sensor histidine kinase | - |
| LLCC_RS05905 (LLCC_1256) | - | 1137771..1138835 (+) | 1065 | WP_011676740.1 | prephenate dehydrogenase | - |
| LLCC_RS05910 (LLCC_1257) | aroA | 1138956..1140248 (+) | 1293 | WP_126354722.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| LLCC_RS05915 (LLCC_1258) | - | 1140272..1140760 (+) | 489 | WP_011676738.1 | shikimate kinase | - |
| LLCC_RS05920 (LLCC_1259) | pheA | 1140762..1141601 (+) | 840 | WP_011676737.1 | prephenate dehydratase | - |
| LLCC_RS05925 (LLCC_1260) | - | 1141604..1142197 (+) | 594 | WP_061777784.1 | histidine phosphatase family protein | - |
| LLCC_RS05930 (LLCC_1261) | - | 1142194..1144695 (+) | 2502 | WP_126354724.1 | ATP-dependent RecD-like DNA helicase | - |
| LLCC_RS05935 (LLCC_1262) | rpsT | 1144789..1145022 (-) | 234 | WP_011676734.1 | 30S ribosomal protein S20 | - |
| LLCC_RS05940 (LLCC_1263) | - | 1145352..1145864 (+) | 513 | WP_061777782.1 | HD domain-containing protein | - |
| LLCC_RS05945 (LLCC_1264) | - | 1146044..1146958 (+) | 915 | WP_011676732.1 | diacylglycerol/lipid kinase family protein | - |
| LLCC_RS05950 (LLCC_1265) | - | 1147080..1148291 (-) | 1212 | WP_126354726.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 423 a.a. Molecular weight: 49018.13 Da Isoelectric Point: 9.7194
>NTDB_id=69799 LLCC_RS05740 WP_324187043.1 1105629..1106900(+) (comEC) [Lactococcus cremoris strain C4]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ
Nucleotide
Download Length: 1272 bp
>NTDB_id=69799 LLCC_RS05740 WP_324187043.1 1105629..1106900(+) (comEC) [Lactococcus cremoris strain C4]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACGGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACGGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC | Lactococcus lactis subsp. cremoris KW2 |
97.122 |
98.582 |
0.957 |
| comEC/celB | Streptococcus mitis SK321 |
46.512 |
91.489 |
0.426 |
| comEC/celB | Streptococcus mitis NCTC 12261 |
45.995 |
91.489 |
0.421 |
| comEC/celB | Streptococcus pneumoniae TIGR4 |
45.995 |
91.489 |
0.421 |
| comEC/celB | Streptococcus pneumoniae Rx1 |
45.22 |
91.489 |
0.414 |
| comEC/celB | Streptococcus pneumoniae D39 |
45.22 |
91.489 |
0.414 |
| comEC/celB | Streptococcus pneumoniae R6 |
45.22 |
91.489 |
0.414 |