Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NES82_RS18590 Genome accession   NZ_CP098777
Coordinates   3825274..3825810 (-) Length   178 a.a.
NCBI ID   WP_004386202.1    Uniprot ID   A0A2S9UB01
Organism   Cronobacter sakazakii strain JXES-28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3820274..3830810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NES82_RS18565 (NES82_18570) soxS 3820516..3820839 (+) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -
  NES82_RS18570 (NES82_18575) - 3820827..3822434 (-) 1608 WP_139156604.1 EAL domain-containing protein -
  NES82_RS18575 (NES82_18580) - 3823020..3823298 (+) 279 WP_004386205.1 YjcB family protein -
  NES82_RS18580 (NES82_18585) - 3823360..3823704 (-) 345 WP_014727966.1 hypothetical protein -
  NES82_RS18585 (NES82_18590) - 3823879..3824925 (-) 1047 WP_054624127.1 GGDEF domain-containing protein -
  NES82_RS18590 (NES82_18595) ssb 3825274..3825810 (-) 537 WP_004386202.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NES82_RS18595 (NES82_18600) uvrA 3826040..3828865 (+) 2826 WP_097564156.1 excinuclease ABC subunit UvrA -
  NES82_RS18600 (NES82_18605) - 3829020..3829466 (+) 447 WP_014727964.1 hypothetical protein -
  NES82_RS18605 (NES82_18610) - 3829479..3829823 (+) 345 WP_161574657.1 hypothetical protein -
  NES82_RS18610 (NES82_18615) - 3829865..3830218 (-) 354 WP_007893292.1 MmcQ/YjbR family DNA-binding protein -
  NES82_RS18615 (NES82_18620) - 3830215..3830637 (-) 423 WP_161574658.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19109.11 Da        Isoelectric Point: 5.2358

>NTDB_id=697894 NES82_RS18590 WP_004386202.1 3825274..3825810(-) (ssb) [Cronobacter sakazakii strain JXES-28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=697894 NES82_RS18590 WP_004386202.1 3825274..3825810(-) (ssb) [Cronobacter sakazakii strain JXES-28]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCAACGTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGCAAGCTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGCCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9UB01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.764
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.607
  ssb Neisseria meningitidis MC58

47.802

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.802

100

0.489