Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFG60_RS04480 Genome accession   NZ_CP098772
Coordinates   1042000..1042584 (+) Length   194 a.a.
NCBI ID   WP_039217393.1    Uniprot ID   A0A0B3YFD5
Organism   Alteromonas macleodii strain QZ9-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1037000..1047584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFG60_RS04465 (NFG60_04465) - 1037627..1038682 (+) 1056 WP_252119553.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  NFG60_RS04470 (NFG60_04470) galK 1038675..1039814 (+) 1140 WP_039217399.1 galactokinase -
  NFG60_RS04475 (NFG60_04475) - 1040170..1041732 (+) 1563 WP_252119554.1 sodium/sugar symporter -
  NFG60_RS04480 (NFG60_04480) ssb 1042000..1042584 (+) 585 WP_039217393.1 single-stranded DNA-binding protein Machinery gene
  NFG60_RS04485 (NFG60_04485) - 1042793..1043746 (+) 954 WP_252119555.1 hypothetical protein -
  NFG60_RS04490 (NFG60_04490) - 1043926..1045215 (+) 1290 WP_252119556.1 dienelactone hydrolase family protein -
  NFG60_RS04495 (NFG60_04495) - 1045439..1046506 (+) 1068 WP_252119557.1 L-dopachrome tautomerase-related protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21156.05 Da        Isoelectric Point: 4.9658

>NTDB_id=697857 NFG60_RS04480 WP_039217393.1 1042000..1042584(+) (ssb) [Alteromonas macleodii strain QZ9-9]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=697857 NFG60_RS04480 WP_039217393.1 1042000..1042584(+) (ssb) [Alteromonas macleodii strain QZ9-9]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B3YFD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.5

100

0.582
  ssb Vibrio cholerae strain A1552

55

100

0.567
  ssb Neisseria meningitidis MC58

46.875

98.969

0.464
  ssb Neisseria gonorrhoeae MS11

46.875

98.969

0.464