Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLCC_RS03255 | Genome accession | NZ_AP018499 |
| Coordinates | 629480..629980 (+) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain C4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 612173..629980 | 629480..629980 | within | 0 |
Gene organization within MGE regions
Location: 612173..629980
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLCC_RS03120 (LLCC_0667) | - | 612173..612505 (-) | 333 | WP_011835936.1 | hypothetical protein | - |
| LLCC_RS03125 (LLCC_0668) | - | 612505..612945 (-) | 441 | WP_126354615.1 | terminase small subunit | - |
| LLCC_RS03130 (LLCC_0669) | - | 613066..613647 (-) | 582 | WP_126354617.1 | hypothetical protein | - |
| LLCC_RS03135 (LLCC_0670) | - | 614110..615783 (-) | 1674 | WP_126354619.1 | hypothetical protein | - |
| LLCC_RS03140 (LLCC_0671) | - | 615892..616221 (-) | 330 | WP_021212130.1 | hypothetical protein | - |
| LLCC_RS03145 (LLCC_0672) | - | 616208..616402 (-) | 195 | WP_126354621.1 | hypothetical protein | - |
| LLCC_RS03155 (LLCC_0674) | - | 616650..616889 (-) | 240 | WP_126354624.1 | hypothetical protein | - |
| LLCC_RS03160 (LLCC_0675) | - | 616926..617207 (-) | 282 | WP_126354626.1 | hypothetical protein | - |
| LLCC_RS03165 (LLCC_0676) | - | 617200..617436 (-) | 237 | WP_126354628.1 | hypothetical protein | - |
| LLCC_RS03170 (LLCC_0677) | - | 617433..617954 (-) | 522 | WP_126354630.1 | hypothetical protein | - |
| LLCC_RS03175 (LLCC_0678) | - | 617958..618152 (-) | 195 | WP_032951169.1 | DUF1655 domain-containing protein | - |
| LLCC_RS03180 (LLCC_0679) | - | 618271..618456 (-) | 186 | WP_063282780.1 | helix-turn-helix domain-containing protein | - |
| LLCC_RS03185 (LLCC_0680) | - | 618539..618865 (+) | 327 | WP_063282781.1 | hypothetical protein | - |
| LLCC_RS03190 (LLCC_0681) | - | 618941..619189 (-) | 249 | WP_126354632.1 | hypothetical protein | - |
| LLCC_RS03195 (LLCC_0682) | - | 619193..619390 (-) | 198 | WP_014573247.1 | hypothetical protein | - |
| LLCC_RS03200 (LLCC_0683) | - | 619650..620036 (+) | 387 | WP_126354634.1 | helix-turn-helix domain-containing protein | - |
| LLCC_RS03205 (LLCC_0684) | - | 620046..620585 (+) | 540 | WP_126354636.1 | hypothetical protein | - |
| LLCC_RS03210 (LLCC_0685) | - | 620906..622090 (+) | 1185 | WP_126354638.1 | tyrosine-type recombinase/integrase | - |
| LLCC_RS03215 (LLCC_0686) | - | 622380..622829 (+) | 450 | WP_011677249.1 | hypothetical protein | - |
| LLCC_RS03220 (LLCC_0687) | - | 622863..623135 (-) | 273 | WP_011677248.1 | chorismate mutase | - |
| LLCC_RS03225 (LLCC_0688) | - | 623219..623707 (+) | 489 | WP_011677247.1 | GAF domain-containing protein | - |
| LLCC_RS03230 (LLCC_0689) | - | 623739..624380 (+) | 642 | WP_011677246.1 | phosphotransferase | - |
| LLCC_RS03235 (LLCC_0690) | dnaX | 624426..626087 (+) | 1662 | WP_011677245.1 | DNA polymerase III subunit gamma/tau | - |
| LLCC_RS03240 (LLCC_0691) | - | 626121..627587 (-) | 1467 | WP_021164830.1 | amino acid permease | - |
| LLCC_RS03245 (LLCC_0692) | - | 628109..628963 (+) | 855 | WP_021164831.1 | undecaprenyl-diphosphate phosphatase | - |
| LLCC_RS03250 (LLCC_0693) | rpsF | 629157..629450 (+) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLCC_RS03255 (LLCC_0694) | ssb | 629480..629980 (+) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=69780 LLCC_RS03255 WP_011677241.1 629480..629980(+) (ssb) [Lactococcus cremoris strain C4]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=69780 LLCC_RS03255 WP_011677241.1 629480..629980(+) (ssb) [Lactococcus cremoris strain C4]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |