Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEB_RS05650 Genome accession   NZ_AP018498
Coordinates   1190465..1191010 (+) Length   181 a.a.
NCBI ID   WP_119082308.1    Uniprot ID   A0A2Z5YV13
Organism   Altererythrobacter sp. B11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1185465..1196010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEB_RS05620 (AEB_P1128) - 1185820..1186263 (-) 444 WP_119082304.1 YcgN family cysteine cluster protein -
  AEB_RS05625 (AEB_P1129) - 1186251..1186835 (-) 585 WP_231958928.1 SCO family protein -
  AEB_RS05630 (AEB_P1130) - 1186917..1187564 (+) 648 WP_231958929.1 ankyrin repeat domain-containing protein -
  AEB_RS05635 (AEB_P1131) - 1187548..1188219 (+) 672 WP_231958930.1 COQ9 family protein -
  AEB_RS05640 (AEB_P1133) - 1188287..1188526 (+) 240 WP_119084484.1 FeoA family protein -
  AEB_RS05645 (AEB_P1134) - 1188523..1190376 (+) 1854 WP_119082307.1 ferrous iron transporter B -
  AEB_RS05650 (AEB_P1135) ssb 1190465..1191010 (+) 546 WP_119082308.1 single-stranded DNA-binding protein Machinery gene
  AEB_RS05655 (AEB_P1136) - 1191246..1191983 (-) 738 WP_119082309.1 SDR family oxidoreductase -
  AEB_RS05660 (AEB_P1137) - 1192069..1192434 (+) 366 WP_119082310.1 helix-turn-helix domain-containing protein -
  AEB_RS05665 (AEB_P1138) - 1192445..1192756 (+) 312 WP_145985270.1 hypothetical protein -
  AEB_RS05670 (AEB_P1139) - 1192947..1193726 (-) 780 WP_119082312.1 SDR family oxidoreductase -
  AEB_RS05675 (AEB_P1140) - 1193723..1194052 (-) 330 WP_119082313.1 nuclear transport factor 2 family protein -
  AEB_RS05680 (AEB_P1141) - 1194153..1195058 (+) 906 WP_119082314.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18628.24 Da        Isoelectric Point: 5.2707

>NTDB_id=69764 AEB_RS05650 WP_119082308.1 1190465..1191010(+) (ssb) [Altererythrobacter sp. B11]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDRNTGERQERTEWHTVAIFSEGLVGVVERFLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLRGMNGTLTMLDGAQGGGGGGGGGQRSGGSGGGWNQGGGNESGGSWGQTGGGAAGGA
GARGGSGGGSNYDDLDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=69764 AEB_RS05650 WP_119082308.1 1190465..1191010(+) (ssb) [Altererythrobacter sp. B11]
ATGGCGGGCAGCCTCAACAAAGTCATGCTCATCGGCAATCTGGGCGCCGATCCCGAAATCCGCAGCTTCCAGAACGGCGG
CAAGGTGGCCAACCTGCGCATCGCCACCAGCGAGACGTGGAAGGATCGCAACACGGGGGAGCGGCAGGAACGCACCGAAT
GGCACACCGTGGCGATCTTCTCCGAAGGGCTCGTCGGCGTGGTGGAACGCTTCCTGCGCAAGGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAGAGCGGGAATGACCGCTACTCCACCGAAGTCGTGCTCCGCGGCAT
GAACGGCACGCTCACCATGCTCGACGGAGCCCAGGGCGGCGGCGGCGGTGGTGGTGGTGGCCAGCGCAGCGGCGGTTCCG
GCGGCGGCTGGAATCAGGGCGGCGGCAACGAGTCGGGCGGTTCCTGGGGCCAGACCGGCGGCGGCGCGGCCGGCGGCGCG
GGCGCGCGGGGCGGCTCCGGCGGCGGCTCCAATTACGACGATCTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5YV13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

98.343

0.503
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.453
  ssb Neisseria meningitidis MC58

38.547

98.895

0.381
  ssb Neisseria gonorrhoeae MS11

37.989

98.895

0.376

Multiple sequence alignment