Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NDR85_RS15985 Genome accession   NZ_CP098738
Coordinates   3155586..3156230 (-) Length   214 a.a.
NCBI ID   WP_044158945.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150586..3161230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS15950 (NDR85_15910) - 3151778..3152209 (+) 432 WP_044158935.1 Na(+)/H(+) antiporter subunit B -
  NDR85_RS15955 (NDR85_15915) - 3152209..3152550 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  NDR85_RS15960 (NDR85_15920) - 3152543..3154024 (+) 1482 WP_044158939.1 Na+/H+ antiporter subunit D -
  NDR85_RS15965 (NDR85_15925) - 3154030..3154506 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  NDR85_RS15970 (NDR85_15930) - 3154506..3154790 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  NDR85_RS15975 (NDR85_15935) mnhG 3154774..3155148 (+) 375 WP_044158942.1 monovalent cation/H(+) antiporter subunit G -
  NDR85_RS15980 (NDR85_15940) - 3155188..3155568 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  NDR85_RS15985 (NDR85_15945) comA 3155586..3156230 (-) 645 WP_044158945.1 two-component system response regulator ComA Regulator
  NDR85_RS15990 (NDR85_15950) comP 3156311..3158620 (-) 2310 WP_263870718.1 two-component system sensor histidine kinase ComP Regulator
  NDR85_RS15995 (NDR85_15955) comX 3158636..3158803 (-) 168 WP_044158946.1 competence pheromone ComX Regulator
  NDR85_RS16000 (NDR85_15960) comQ 3158787..3159692 (-) 906 WP_044160315.1 polyprenyl synthetase family protein Regulator
  NDR85_RS16005 (NDR85_15965) degQ 3159877..3160017 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  NDR85_RS16010 (NDR85_15970) - 3160478..3160846 (+) 369 WP_044158947.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24114.48 Da        Isoelectric Point: 4.6801

>NTDB_id=697574 NDR85_RS15985 WP_044158945.1 3155586..3156230(-) (comA) [Bacillus halotolerans strain XE48]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=697574 NDR85_RS15985 WP_044158945.1 3155586..3156230(-) (comA) [Bacillus halotolerans strain XE48]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATTTGAATTTAGGCGGCGAAGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTTACACCACGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCAGTTTTGATTGCAAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995