Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   M5E07_RS15345 Genome accession   NZ_CP098732
Coordinates   3191343..3192485 (+) Length   380 a.a.
NCBI ID   WP_116763330.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3186343..3197485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS15325 (M5E07_15325) - 3186916..3188934 (-) 2019 WP_252220522.1 TonB-dependent copper receptor -
  M5E07_RS15330 (M5E07_15330) - 3189002..3189433 (-) 432 WP_116763324.1 DUF2946 family protein -
  M5E07_RS15335 (M5E07_15335) def 3189523..3190056 (-) 534 WP_116763326.1 peptide deformylase -
  M5E07_RS15340 (M5E07_15340) tsaP 3190176..3191330 (+) 1155 WP_252220524.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M5E07_RS15345 (M5E07_15345) dprA 3191343..3192485 (+) 1143 WP_116763330.1 DNA-processing protein DprA Machinery gene
  M5E07_RS15350 (M5E07_15350) - 3192524..3193093 (+) 570 WP_252220526.1 Sua5/YciO/YrdC/YwlC family protein -
  M5E07_RS15355 (M5E07_15355) - 3193484..3194413 (-) 930 WP_252220528.1 DMT family transporter -
  M5E07_RS15360 (M5E07_15360) - 3194554..3195312 (+) 759 WP_252220531.1 helix-turn-helix domain-containing protein -
  M5E07_RS15365 (M5E07_15365) - 3195419..3195964 (+) 546 WP_116763338.1 redoxin domain-containing protein -
  M5E07_RS15370 (M5E07_15370) - 3196138..3196554 (+) 417 WP_116763340.1 RcnB family protein -
  M5E07_RS15375 (M5E07_15375) - 3196706..3197278 (+) 573 WP_116763342.1 hypothetical protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42771.69 Da        Isoelectric Point: 7.0206

>NTDB_id=697492 M5E07_RS15345 WP_116763330.1 3191343..3192485(+) (dprA) [Acinetobacter tibetensis strain Y-23]
MLKPLSQVQMDIITLWYLVQHSLSSFYKLEQHFGTAHNAVQPHNLQGWSKLGLHKNHIQRAQQFYTAPEQNKFQHVIQEI
QQHSDFVLSYHDPEYPQQLLPYSDKPPILFGQGQLSLLMQPQIAIVGSRKPSPHGRQIAYDFSYYLSEKGFVISSGLAQG
IDEAAHQGALSHQRTLAVMGTGLDQTYPSQHQQLRQQILQQSGAIISEFLPHTPPLQHHFPRRNRIVSALSLGVIVAEAS
LKSGSIITAKLAAEQGKLVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVLEDLALPTQWQAQQQSQGDSTTQPLAKPE
IPEHLMSLYNQLNWTGYPLDHLAIHLKQDTASLTAQLMELELLGLCMQQSGVYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=697492 M5E07_RS15345 WP_116763330.1 3191343..3192485(+) (dprA) [Acinetobacter tibetensis strain Y-23]
ATGCTGAAACCATTATCACAAGTGCAAATGGACATCATTACCTTGTGGTATTTGGTTCAGCACTCGCTCAGCAGTTTTTA
CAAACTAGAACAACACTTTGGTACAGCCCACAATGCGGTACAGCCTCACAATTTACAGGGTTGGTCAAAATTAGGTTTAC
ATAAAAATCATATTCAACGCGCGCAACAGTTTTACACAGCGCCTGAACAAAATAAGTTTCAGCACGTCATTCAGGAAATT
CAGCAACATAGTGATTTTGTACTGAGTTATCACGATCCTGAATACCCACAACAACTGCTGCCTTATAGTGATAAACCCCC
GATTCTGTTTGGACAAGGGCAACTTTCGCTCTTGATGCAGCCACAAATTGCGATTGTTGGCAGTCGTAAACCAAGTCCGC
ATGGTCGACAAATCGCCTATGATTTTTCGTACTATCTTAGTGAAAAAGGTTTTGTCATTAGCAGCGGCTTAGCACAAGGC
ATTGATGAGGCTGCACATCAGGGCGCTTTATCCCATCAACGTACACTGGCAGTGATGGGCACAGGACTTGATCAAACTTA
TCCTTCACAGCATCAGCAACTTCGCCAGCAAATTTTGCAGCAGTCGGGTGCTATCATCAGTGAGTTTTTACCCCATACTC
CACCCCTGCAACATCATTTCCCGCGCCGCAATCGAATTGTCAGTGCACTCTCTTTAGGCGTGATTGTTGCTGAAGCCAGT
TTAAAAAGTGGTTCGATCATTACCGCTAAACTTGCAGCAGAACAAGGCAAATTGGTGTTTGCGATTCCTGGACATATTTA
TAGTGAATTCCATCAAGGTTGCCATCAACTGATTCGTGAAGGCGCAATTCTGGTGGATCATCCTGAACAAGTCTTAGAAG
ACCTCGCTTTACCGACTCAATGGCAAGCGCAGCAGCAATCTCAGGGTGACTCAACCACACAACCACTCGCAAAGCCCGAG
ATTCCTGAGCATTTAATGTCGCTTTACAATCAACTGAACTGGACGGGCTATCCTTTGGATCATTTGGCCATCCATCTGAA
GCAAGATACCGCCTCACTGACTGCCCAGTTGATGGAACTGGAGCTTTTAGGCTTATGTATGCAACAATCTGGGGTTTATT
TGCGTTGTCGTCCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.313

99.211

0.658

  dprA Acinetobacter baumannii D1279779

65.782

99.211

0.653

  dprA Acinetobacter baylyi ADP1

62.632

100

0.626