Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   M5E07_RS15340 Genome accession   NZ_CP098732
Coordinates   3190176..3191330 (+) Length   384 a.a.
NCBI ID   WP_252220524.1    Uniprot ID   A0AAE9LQZ2
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185176..3196330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS15325 (M5E07_15325) - 3186916..3188934 (-) 2019 WP_252220522.1 TonB-dependent copper receptor -
  M5E07_RS15330 (M5E07_15330) - 3189002..3189433 (-) 432 WP_116763324.1 DUF2946 family protein -
  M5E07_RS15335 (M5E07_15335) def 3189523..3190056 (-) 534 WP_116763326.1 peptide deformylase -
  M5E07_RS15340 (M5E07_15340) tsaP 3190176..3191330 (+) 1155 WP_252220524.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M5E07_RS15345 (M5E07_15345) dprA 3191343..3192485 (+) 1143 WP_116763330.1 DNA-processing protein DprA Machinery gene
  M5E07_RS15350 (M5E07_15350) - 3192524..3193093 (+) 570 WP_252220526.1 Sua5/YciO/YrdC/YwlC family protein -
  M5E07_RS15355 (M5E07_15355) - 3193484..3194413 (-) 930 WP_252220528.1 DMT family transporter -
  M5E07_RS15360 (M5E07_15360) - 3194554..3195312 (+) 759 WP_252220531.1 helix-turn-helix domain-containing protein -
  M5E07_RS15365 (M5E07_15365) - 3195419..3195964 (+) 546 WP_116763338.1 redoxin domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42019.18 Da        Isoelectric Point: 7.8991

>NTDB_id=697491 M5E07_RS15340 WP_252220524.1 3190176..3191330(+) (tsaP) [Acinetobacter tibetensis strain Y-23]
MKKVLKGMPSFSALGFKQQLLALTVGLAISVGSIAVVEAAPARNINPPSLKAGAPQVYVVKKGDTLWDISGKFLDKPWRW
PEIWASNRHVKNPHWIFPGDKLLLCSYQGKPLIGKDEGDGCDGIIRRYAGGTKLQPQVRIESLNNAIPVIPLDNIKQWLE
HSTIVAPESVDNTPYVLGTADQRVLAAKGQTIYARGNGLEVGQQYAVYREGDPYTLNNEKGKKYNAGLELNQVATGIAVA
SENDITTLELTDSFNAEVRRGDRVLPVYDPMLPTLFYPTMAEDVTAGGQIVRVMGSIGTAAQHSVVTIDRGSFEGVQVGH
VFSINQKGEQVRDPKTKEMVQLPGQKIGNLMVFKTFDHFSYGYVLDSSLPIKIGAYIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=697491 M5E07_RS15340 WP_252220524.1 3190176..3191330(+) (tsaP) [Acinetobacter tibetensis strain Y-23]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAACAGCAATTGTTGGCACTGACTGTCGGTTT
GGCGATCAGTGTTGGTTCTATCGCAGTGGTTGAAGCTGCACCAGCTCGTAATATTAATCCACCTTCATTAAAAGCGGGTG
CACCACAAGTTTATGTGGTGAAAAAGGGTGACACCCTCTGGGATATTTCGGGGAAATTTTTAGATAAGCCTTGGCGCTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTGAAAAATCCACACTGGATTTTCCCTGGCGATAAACTTTTACTGTGTAGCTA
TCAAGGTAAGCCCCTGATTGGCAAAGATGAAGGTGATGGCTGTGATGGTATTATTCGTCGTTATGCAGGGGGAACCAAGT
TACAACCCCAAGTGCGAATTGAATCCTTAAATAATGCTATTCCTGTAATTCCATTAGACAATATTAAACAATGGTTAGAA
CATTCAACCATTGTTGCTCCTGAGTCAGTGGACAATACACCTTATGTACTGGGTACCGCCGATCAACGCGTATTGGCAGC
CAAAGGTCAAACCATCTATGCGCGTGGCAATGGCTTAGAAGTGGGTCAGCAATATGCGGTTTATCGCGAAGGCGACCCGT
ACACCCTCAACAATGAAAAAGGCAAAAAGTATAATGCTGGGCTTGAGTTGAATCAGGTGGCGACGGGCATAGCTGTTGCA
AGTGAAAATGACATCACAACACTGGAATTAACAGATAGCTTTAATGCCGAAGTACGTCGTGGTGACCGTGTACTGCCTGT
TTATGACCCAATGTTGCCTACCCTGTTTTATCCAACCATGGCGGAAGATGTAACGGCTGGAGGGCAAATTGTTCGAGTGA
TGGGCTCTATTGGCACTGCTGCCCAACACAGCGTCGTGACGATAGACCGCGGTAGTTTTGAAGGCGTACAAGTGGGCCAT
GTATTTAGCATCAACCAAAAAGGTGAACAGGTTCGAGACCCGAAAACCAAAGAAATGGTGCAATTGCCTGGACAGAAAAT
TGGTAACTTAATGGTATTTAAAACTTTTGATCACTTTAGCTATGGTTATGTGCTCGACAGTTCCTTACCAATCAAAATCG
GTGCTTACATTCAACCACCTTTAATGGACGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685