Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP36_RS08425 Genome accession   NZ_CP115227
Coordinates   1764906..1765331 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1759906..1770331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS08410 (PCP36_08405) pilX 1760470..1761057 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP36_RS08415 (PCP36_08410) pilY1 1761069..1764560 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP36_RS08420 (PCP36_08415) pilY2 1764562..1764909 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP36_RS08425 (PCP36_08420) comF 1764906..1765331 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP36_RS08430 (PCP36_08425) ispH 1765378..1766322 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP36_RS08435 (PCP36_08430) fkpB 1766408..1766848 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP36_RS08440 (PCP36_08435) lspA 1766841..1767350 (-) 510 WP_003102615.1 signal peptidase II -
  PCP36_RS08445 (PCP36_08440) ileS 1767343..1770174 (-) 2832 WP_003119417.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=697246 PCP36_RS08425 WP_003094721.1 1764906..1765331(+) (comF) [Pseudomonas aeruginosa strain F052]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=697246 PCP36_RS08425 WP_003094721.1 1764906..1765331(+) (comF) [Pseudomonas aeruginosa strain F052]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383