Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NDQ67_RS02325 Genome accession   NZ_CP098546
Coordinates   449986..450597 (+) Length   203 a.a.
NCBI ID   WP_003699626.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9126     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 444986..455597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ67_RS02300 (NDQ67_02285) - 445584..445916 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ67_RS02305 (NDQ67_02290) - 446243..446752 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ67_RS02310 (NDQ67_02295) - 446984..447565 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ67_RS02315 (NDQ67_02300) dnaB 447729..449135 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ67_RS02320 (NDQ67_02305) pilH 449289..449954 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ67_RS02325 (NDQ67_02310) pilV 449986..450597 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDQ67_RS02330 (NDQ67_02315) pilJ 450594..451544 (+) 951 WP_229931673.1 PilW family protein Machinery gene
  NDQ67_RS02335 (NDQ67_02320) pilK 451523..452134 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ67_RS02340 (NDQ67_02325) pilL 452136..452609 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ67_RS02345 (NDQ67_02330) - 452679..452987 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ67_RS02350 (NDQ67_02335) - 452984..453694 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ67_RS02355 (NDQ67_02340) dut 453860..454312 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ67_RS02360 (NDQ67_02345) dapC 454388..455575 (+) 1188 WP_229931672.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21997.01 Da        Isoelectric Point: 5.0177

>NTDB_id=696915 NDQ67_RS02325 WP_003699626.1 449986..450597(+) (pilV) [Neisseria gonorrhoeae strain 9126]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTPSAVDGKFTLDAEKSKAQLAEEQLKRFSYELKNALPDAVGIHYAVCKDSSGNEPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLGVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=696915 NDQ67_RS02325 WP_003699626.1 449986..450597(+) (pilV) [Neisseria gonorrhoeae strain 9126]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGCTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGATAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACCATCAGCTGTGGATGGTAAGTTTACGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAACGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGGGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.44

100

0.892
  pilI Neisseria gonorrhoeae MS11

82.759

100

0.828
  pilV Neisseria gonorrhoeae MS11

82.759

100

0.828