Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   NDQ67_RS02330 Genome accession   NZ_CP098546
Coordinates   450594..451544 (+) Length   316 a.a.
NCBI ID   WP_229931673.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9126     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445594..456544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ67_RS02305 (NDQ67_02290) - 446243..446752 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ67_RS02310 (NDQ67_02295) - 446984..447565 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ67_RS02315 (NDQ67_02300) dnaB 447729..449135 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ67_RS02320 (NDQ67_02305) pilH 449289..449954 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ67_RS02325 (NDQ67_02310) pilV 449986..450597 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDQ67_RS02330 (NDQ67_02315) pilJ 450594..451544 (+) 951 WP_229931673.1 PilW family protein Machinery gene
  NDQ67_RS02335 (NDQ67_02320) pilK 451523..452134 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ67_RS02340 (NDQ67_02325) pilL 452136..452609 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ67_RS02345 (NDQ67_02330) - 452679..452987 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ67_RS02350 (NDQ67_02335) - 452984..453694 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ67_RS02355 (NDQ67_02340) dut 453860..454312 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ67_RS02360 (NDQ67_02345) dapC 454388..455575 (+) 1188 WP_229931672.1 succinyldiaminopimelate transaminase -
  NDQ67_RS02365 (NDQ67_02350) yaaA 455731..456510 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34758.47 Da        Isoelectric Point: 9.1777

>NTDB_id=696916 NDQ67_RS02330 WP_229931673.1 450594..451544(+) (pilJ) [Neisseria gonorrhoeae strain 9126]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVGSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=696916 NDQ67_RS02330 WP_229931673.1 450594..451544(+) (pilJ) [Neisseria gonorrhoeae strain 9126]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTGGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

92.722

100

0.927