Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDQ67_RS02335 Genome accession   NZ_CP098546
Coordinates   451523..452134 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9126     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446523..457134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ67_RS02310 (NDQ67_02295) - 446984..447565 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ67_RS02315 (NDQ67_02300) dnaB 447729..449135 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ67_RS02320 (NDQ67_02305) pilH 449289..449954 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ67_RS02325 (NDQ67_02310) pilV 449986..450597 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDQ67_RS02330 (NDQ67_02315) pilJ 450594..451544 (+) 951 WP_229931673.1 PilW family protein Machinery gene
  NDQ67_RS02335 (NDQ67_02320) pilK 451523..452134 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ67_RS02340 (NDQ67_02325) pilL 452136..452609 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ67_RS02345 (NDQ67_02330) - 452679..452987 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ67_RS02350 (NDQ67_02335) - 452984..453694 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ67_RS02355 (NDQ67_02340) dut 453860..454312 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ67_RS02360 (NDQ67_02345) dapC 454388..455575 (+) 1188 WP_229931672.1 succinyldiaminopimelate transaminase -
  NDQ67_RS02365 (NDQ67_02350) yaaA 455731..456510 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=696917 NDQ67_RS02335 WP_033911077.1 451523..452134(+) (pilK) [Neisseria gonorrhoeae strain 9126]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=696917 NDQ67_RS02335 WP_033911077.1 451523..452134(+) (pilK) [Neisseria gonorrhoeae strain 9126]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956