Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ68_RS11065 Genome accession   NZ_CP098542
Coordinates   2104495..2105001 (-) Length   168 a.a.
NCBI ID   WP_267696237.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10704     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099495..2110001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ68_RS11045 (NDQ68_10955) msrAB 2100032..2101600 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDQ68_RS11050 (NDQ68_10960) pilA 2101746..2102999 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ68_RS11055 (NDQ68_11820) - 2103115..2103255 (-) 141 WP_179133147.1 hypothetical protein -
  NDQ68_RS11060 (NDQ68_11825) - 2103269..2103982 (-) 714 WP_229931770.1 opacity family porin -
  NDQ68_RS11065 (NDQ68_10980) pilE 2104495..2105001 (-) 507 WP_267696237.1 pilin Machinery gene
  NDQ68_RS11070 (NDQ68_11830) - 2105368..2105511 (-) 144 WP_012503975.1 hypothetical protein -
  NDQ68_RS11080 (NDQ68_10985) - 2105814..2106158 (-) 345 Protein_2137 pilin -
  NDQ68_RS11085 (NDQ68_10990) - 2106152..2106550 (-) 399 Protein_2138 pilin -
  NDQ68_RS11090 (NDQ68_10995) pilE 2107062..2107478 (-) 417 WP_229931784.1 pilin Machinery gene
  NDQ68_RS11095 (NDQ68_11000) lpxC 2107584..2108507 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ68_RS11925 - 2109031..2109753 (-) 723 WP_411268511.1 pilin -
  NDQ68_RS11115 (NDQ68_11020) - 2109779..2109994 (-) 216 Protein_2142 pilin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18147.53 Da        Isoelectric Point: 7.1341

>NTDB_id=696851 NDQ68_RS11065 WP_267696237.1 2104495..2105001(-) (pilE) [Neisseria gonorrhoeae strain 10704]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASSSSIK
GKYVKEVEVKNGVVTAQMKSDGVNKEIKDKRLSLWAKRENGSVKWFCGQPVQRAAAGTDDDAVAKDDTNAIDTKHLPSTC
RDTSSDAK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=696851 NDQ68_RS11065 WP_267696237.1 2104495..2105001(-) (pilE) [Neisseria gonorrhoeae strain 10704]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCG
CCGCCGCCGGCACCGACGACGACGCCGTCGCCAAAGACGACACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGC
CGTGATACGTCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

84.118

100

0.851
  pilE Neisseria gonorrhoeae strain FA1090

83.636

98.214

0.821
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.854

100

0.387
  pilA/pilA1 Eikenella corrodens VA1

38.182

98.214

0.375