Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NDQ65_RS02350 Genome accession   NZ_CP098538
Coordinates   450639..451112 (+) Length   157 a.a.
NCBI ID   WP_172616930.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445639..456112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS02325 (NDQ65_02320) dnaB 446078..447484 (+) 1407 WP_003706599.1 replicative DNA helicase -
  NDQ65_RS02330 (NDQ65_02325) pilH 447792..448457 (+) 666 WP_082298536.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ65_RS02335 (NDQ65_02330) pilI 448489..449106 (+) 618 WP_082298535.1 type IV pilus modification protein PilV Machinery gene
  NDQ65_RS02340 (NDQ65_02335) pilJ 449103..450050 (+) 948 WP_082298534.1 PilW family protein Machinery gene
  NDQ65_RS02345 (NDQ65_02340) pilK 450029..450637 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ65_RS02350 (NDQ65_02345) pilL 450639..451112 (+) 474 WP_172616930.1 PilX family type IV pilin Machinery gene
  NDQ65_RS02355 (NDQ65_02350) - 451182..451490 (-) 309 WP_047921007.1 AzlD family protein -
  NDQ65_RS02360 (NDQ65_02355) - 451487..452198 (-) 712 Protein_460 AzlC family ABC transporter permease -
  NDQ65_RS02365 (NDQ65_02360) dut 452364..452816 (+) 453 WP_003702446.1 dUTP diphosphatase -
  NDQ65_RS02370 (NDQ65_02365) dapC 452894..454081 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -
  NDQ65_RS02375 (NDQ65_02370) yaaA 454392..455171 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17616.44 Da        Isoelectric Point: 9.1635

>NTDB_id=696777 NDQ65_RS02350 WP_172616930.1 450639..451112(+) (pilL) [Neisseria gonorrhoeae strain ATCC 49226]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVLGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAWVYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=696777 NDQ65_RS02350 WP_172616930.1 450639..451112(+) (pilL) [Neisseria gonorrhoeae strain ATCC 49226]
ATGGAGCAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCTGGGTCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

94.268

100

0.943
  pilX Neisseria meningitidis 8013

83.439

100

0.834