Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDQ65_RS02330 Genome accession   NZ_CP098538
Coordinates   447792..448457 (+) Length   221 a.a.
NCBI ID   WP_082298536.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442792..453457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS02305 (NDQ65_02300) cysT 442911..443748 (-) 838 Protein_449 sulfate ABC transporter permease subunit CysT -
  NDQ65_RS02310 (NDQ65_02305) - 443934..444266 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ65_RS02315 (NDQ65_02310) - 444593..445102 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ65_RS02320 (NDQ65_02315) - 445334..445915 (-) 582 WP_003687910.1 superoxide dismutase -
  NDQ65_RS02325 (NDQ65_02320) dnaB 446078..447484 (+) 1407 WP_003706599.1 replicative DNA helicase -
  NDQ65_RS02330 (NDQ65_02325) pilH 447792..448457 (+) 666 WP_082298536.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ65_RS02335 (NDQ65_02330) pilI 448489..449106 (+) 618 WP_082298535.1 type IV pilus modification protein PilV Machinery gene
  NDQ65_RS02340 (NDQ65_02335) pilJ 449103..450050 (+) 948 WP_082298534.1 PilW family protein Machinery gene
  NDQ65_RS02345 (NDQ65_02340) pilK 450029..450637 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ65_RS02350 (NDQ65_02345) pilL 450639..451112 (+) 474 WP_172616930.1 PilX family type IV pilin Machinery gene
  NDQ65_RS02355 (NDQ65_02350) - 451182..451490 (-) 309 WP_047921007.1 AzlD family protein -
  NDQ65_RS02360 (NDQ65_02355) - 451487..452198 (-) 712 Protein_460 AzlC family ABC transporter permease -
  NDQ65_RS02365 (NDQ65_02360) dut 452364..452816 (+) 453 WP_003702446.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24588.06 Da        Isoelectric Point: 9.6053

>NTDB_id=696773 NDQ65_RS02330 WP_082298536.1 447792..448457(+) (pilH) [Neisseria gonorrhoeae strain ATCC 49226]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVN
NQCDFGKKGQGMLAFGDKNDNKAYDGDTKDVFLRNVVLNDDINDKRINYTFNHIAFGQIQPTAERVVWTFNQNGTFGYSS
DQNPKPASKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=696773 NDQ65_RS02330 WP_082298536.1 447792..448457(+) (pilH) [Neisseria gonorrhoeae strain ATCC 49226]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAGTGCGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCAGAATCCCAAGCCTGCTTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.593

100

0.896