Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NDQ71_RS08500 Genome accession   NZ_CP098523
Coordinates   1800355..1801254 (+) Length   299 a.a.
NCBI ID   WP_301562581.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. KG3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795355..1806254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ71_RS08480 (NDQ71_08465) - 1795618..1795752 (+) 135 Protein_1653 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NDQ71_RS08485 (NDQ71_08470) - 1795780..1796916 (-) 1137 WP_024602346.1 ISAs1 family transposase -
  NDQ71_RS08490 (NDQ71_08475) - 1796997..1797281 (+) 285 WP_301562579.1 pilin -
  NDQ71_RS08495 (NDQ71_08480) pilC 1797416..1798642 (+) 1227 WP_301562580.1 type II secretion system F family protein Machinery gene
  NDQ71_RS08500 (NDQ71_08485) pilD 1800355..1801254 (+) 900 WP_301562581.1 A24 family peptidase Machinery gene
  NDQ71_RS08505 (NDQ71_08490) coaE 1801256..1801885 (+) 630 WP_301562582.1 dephospho-CoA kinase -
  NDQ71_RS08510 (NDQ71_08495) pilB 1802018..1803697 (+) 1680 WP_283710120.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDQ71_RS08515 (NDQ71_08500) yacG 1803759..1803989 (+) 231 WP_064667149.1 DNA gyrase inhibitor YacG -
  NDQ71_RS08520 (NDQ71_08505) - 1805007..1806239 (-) 1233 WP_301562583.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33131.75 Da        Isoelectric Point: 7.8511

>NTDB_id=696603 NDQ71_RS08500 WP_301562581.1 1800355..1801254(+) (pilD) [Pseudoalteromonas sp. KG3]
MQNFFLDIITVMQSQLWFYLLTVGLVSLCVGSFLNVVIYRLPLMMQREWQTECRVLLADDLKPTKAANTEAAFNLVKPNS
TCPKCKTAIKPWQNIPVISWLLLKGRCASCSNPISIRYPIVEMLTAILSLIVAYIFGATEQALLYILITWVLVALTFIDI
DHMLLPDQLTLPLVWLALIAAVMGITISPTDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGWQSLL
TIVLLSSVVGAIIGIALLTIQGKDKATPIPFGPYLAIAGWVTLLWGTQIQAFYFNWLGY

Nucleotide


Download         Length: 900 bp        

>NTDB_id=696603 NDQ71_RS08500 WP_301562581.1 1800355..1801254(+) (pilD) [Pseudoalteromonas sp. KG3]
ATGCAAAATTTCTTTCTCGATATAATCACAGTAATGCAAAGCCAACTGTGGTTTTATTTACTCACAGTTGGCTTAGTTAG
CCTATGTGTTGGCAGTTTTTTGAATGTAGTGATTTATCGACTGCCACTGATGATGCAGCGCGAATGGCAAACAGAATGCC
GTGTTTTATTAGCTGATGATTTAAAGCCGACCAAAGCAGCTAATACAGAGGCTGCATTCAATCTAGTAAAGCCCAACTCG
ACCTGCCCTAAATGCAAAACGGCAATTAAGCCATGGCAAAATATTCCTGTTATTAGCTGGTTATTATTAAAAGGCCGCTG
CGCTAGTTGCAGTAACCCAATTTCGATTCGTTACCCCATAGTGGAAATGCTCACTGCTATTTTAAGTTTAATAGTCGCCT
ATATCTTTGGCGCGACAGAGCAAGCACTACTGTATATTTTAATTACTTGGGTATTAGTCGCGCTGACCTTTATTGATATT
GACCACATGCTGCTACCCGATCAACTTACCCTACCACTCGTTTGGCTAGCACTGATTGCAGCTGTAATGGGTATTACAAT
TTCACCTACTGATGCGATTATTGGTGCAGCGTGTGGTTACTTAAGTTTATGGAGCGTATTTTGGCTATTTAAACTGATCA
CCGGCAAAGAAGGCATGGGTTATGGTGATTTTAAATTATTAGCTGTATTCGGTGCCTTACTGGGTTGGCAATCTCTACTC
ACTATTGTTTTATTATCGAGTGTGGTGGGCGCCATTATCGGCATTGCACTACTAACTATTCAGGGTAAAGACAAAGCCAC
ACCTATTCCGTTTGGCCCTTATCTCGCCATTGCTGGCTGGGTTACCTTATTATGGGGCACACAAATCCAAGCATTCTATT
TTAATTGGTTAGGTTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(147-255)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(26-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.196

95.652

0.518
  pilD Acinetobacter baumannii D1279779

53.633

96.656

0.518
  pilD Acinetobacter nosocomialis M2

53.287

96.656

0.515
  pilD Vibrio campbellii strain DS40M4

53.125

96.321

0.512
  pilD Neisseria gonorrhoeae MS11

45.525

85.953

0.391