Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NDN18_RS15705 | Genome accession | NZ_CP098521 |
| Coordinates | 3277349..3277702 (-) | Length | 117 a.a. |
| NCBI ID | WP_032058795.1 | Uniprot ID | A0A009PIV2 |
| Organism | Acinetobacter baumannii strain Cl107 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3270384..3313273 | 3277349..3277702 | within | 0 |
Gene organization within MGE regions
Location: 3270384..3313273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDN18_RS15670 (NDN18_15665) | - | 3270384..3271331 (+) | 948 | WP_001254615.1 | LysR substrate-binding domain-containing protein | - |
| NDN18_RS15675 (NDN18_15670) | - | 3271425..3272600 (-) | 1176 | WP_000843791.1 | zinc-binding dehydrogenase | - |
| NDN18_RS15680 (NDN18_15675) | - | 3272960..3274050 (+) | 1091 | WP_085940413.1 | IS4-like element ISAba1 family transposase | - |
| NDN18_RS15685 (NDN18_15680) | add | 3274192..3275187 (+) | 996 | WP_000629047.1 | adenosine deaminase | - |
| NDN18_RS15695 (NDN18_15690) | - | 3275875..3277035 (-) | 1161 | WP_255878016.1 | tyrosine-type recombinase/integrase | - |
| NDN18_RS15700 (NDN18_15695) | - | 3277124..3277327 (-) | 204 | WP_032058794.1 | hypothetical protein | - |
| NDN18_RS15705 (NDN18_15700) | ssb | 3277349..3277702 (-) | 354 | WP_032058795.1 | single-stranded DNA-binding protein | Machinery gene |
| NDN18_RS15710 (NDN18_15705) | - | 3277708..3278049 (-) | 342 | WP_032058796.1 | hypothetical protein | - |
| NDN18_RS15715 (NDN18_15710) | - | 3278118..3278708 (-) | 591 | WP_032058797.1 | hypothetical protein | - |
| NDN18_RS15720 (NDN18_15715) | - | 3278725..3281451 (-) | 2727 | WP_211088255.1 | toprim domain-containing protein | - |
| NDN18_RS15725 (NDN18_15720) | - | 3281461..3281631 (-) | 171 | WP_004738295.1 | hypothetical protein | - |
| NDN18_RS15730 (NDN18_15725) | - | 3281646..3281885 (-) | 240 | WP_114166563.1 | hypothetical protein | - |
| NDN18_RS15735 (NDN18_15730) | - | 3281888..3282088 (-) | 201 | WP_114166561.1 | hypothetical protein | - |
| NDN18_RS15740 (NDN18_15735) | - | 3282172..3282522 (+) | 351 | WP_004738288.1 | hypothetical protein | - |
| NDN18_RS15745 (NDN18_15740) | - | 3282519..3283097 (-) | 579 | WP_114166559.1 | hypothetical protein | - |
| NDN18_RS15750 (NDN18_15745) | - | 3283094..3283417 (-) | 324 | WP_004738284.1 | hypothetical protein | - |
| NDN18_RS15755 (NDN18_15750) | - | 3283833..3284840 (+) | 1008 | WP_004738282.1 | WYL domain-containing protein | - |
| NDN18_RS15760 (NDN18_15755) | - | 3284872..3285681 (+) | 810 | WP_004738281.1 | trypsin-like peptidase domain-containing protein | - |
| NDN18_RS15765 (NDN18_15760) | - | 3286014..3287285 (-) | 1272 | WP_255878017.1 | acyltransferase | - |
| NDN18_RS15770 (NDN18_15765) | - | 3287278..3287631 (-) | 354 | WP_211088256.1 | hypothetical protein | - |
| NDN18_RS15775 (NDN18_15770) | - | 3287636..3288031 (-) | 396 | WP_004738278.1 | hypothetical protein | - |
| NDN18_RS15780 (NDN18_15775) | - | 3288031..3288318 (-) | 288 | WP_004738277.1 | ogr/Delta-like zinc finger family protein | - |
| NDN18_RS20480 | - | 3288437..3288628 (+) | 192 | WP_079270046.1 | Com family DNA-binding transcriptional regulator | - |
| NDN18_RS15785 (NDN18_15780) | - | 3288597..3289388 (+) | 792 | WP_064191562.1 | DNA adenine methylase | - |
| NDN18_RS15790 (NDN18_15785) | - | 3289385..3290602 (-) | 1218 | WP_004738275.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| NDN18_RS15795 (NDN18_15790) | - | 3290606..3291025 (-) | 420 | WP_064191561.1 | phage tail protein | - |
| NDN18_RS15800 (NDN18_15795) | - | 3291040..3294669 (-) | 3630 | WP_255878019.1 | phage tail protein | - |
| NDN18_RS15805 (NDN18_15800) | - | 3294666..3294734 (-) | 69 | WP_238826551.1 | GpE family phage tail protein | - |
| NDN18_RS15810 (NDN18_15805) | - | 3294794..3295174 (-) | 381 | WP_255878020.1 | phage tail assembly protein | - |
| NDN18_RS15815 (NDN18_15810) | - | 3295237..3295752 (-) | 516 | WP_255878021.1 | phage major tail tube protein | - |
| NDN18_RS15820 (NDN18_15815) | - | 3295764..3296933 (-) | 1170 | WP_004738266.1 | phage tail sheath protein | - |
| NDN18_RS15825 (NDN18_15820) | - | 3297042..3297539 (-) | 498 | WP_005111997.1 | hypothetical protein | - |
| NDN18_RS15830 (NDN18_15825) | - | 3297541..3300975 (-) | 3435 | WP_255878022.1 | phage tail protein | - |
| NDN18_RS15835 (NDN18_15830) | - | 3300976..3301512 (-) | 537 | WP_005112001.1 | phage tail protein I | - |
| NDN18_RS15840 (NDN18_15835) | - | 3301512..3302429 (-) | 918 | WP_005112003.1 | baseplate J/gp47 family protein | - |
| NDN18_RS15845 (NDN18_15840) | - | 3302426..3302782 (-) | 357 | WP_196085348.1 | GPW/gp25 family protein | - |
| NDN18_RS15850 (NDN18_15845) | - | 3302779..3303333 (-) | 555 | WP_196085347.1 | phage baseplate assembly protein V | - |
| NDN18_RS15855 (NDN18_15850) | - | 3303394..3303855 (-) | 462 | WP_032058820.1 | phage virion morphogenesis protein | - |
| NDN18_RS15860 (NDN18_15855) | - | 3303859..3304389 (-) | 531 | WP_005112011.1 | phage tail protein | - |
| NDN18_RS15865 (NDN18_15860) | - | 3304386..3305216 (-) | 831 | WP_156190991.1 | N-acetylmuramidase family protein | - |
| NDN18_RS15870 (NDN18_15865) | - | 3305188..3305469 (-) | 282 | WP_255878023.1 | phage holin family protein | - |
| NDN18_RS15875 (NDN18_15870) | - | 3305466..3305825 (-) | 360 | WP_004703727.1 | putative holin | - |
| NDN18_RS15880 (NDN18_15875) | - | 3305828..3306037 (-) | 210 | WP_004703729.1 | tail protein X | - |
| NDN18_RS15885 (NDN18_15880) | - | 3306034..3306483 (-) | 450 | WP_196085346.1 | head completion/stabilization protein | - |
| NDN18_RS15890 (NDN18_15885) | gpM | 3306584..3307348 (-) | 765 | WP_196085345.1 | phage terminase small subunit | - |
| NDN18_RS15895 (NDN18_15890) | - | 3307355..3308365 (-) | 1011 | WP_001247975.1 | phage major capsid protein, P2 family | - |
| NDN18_RS15900 (NDN18_15895) | - | 3308401..3309261 (-) | 861 | WP_196085344.1 | GPO family capsid scaffolding protein | - |
| NDN18_RS15905 (NDN18_15900) | - | 3309440..3311218 (+) | 1779 | WP_196085343.1 | terminase family protein | - |
| NDN18_RS15910 (NDN18_15905) | - | 3311215..3312261 (+) | 1047 | WP_254231395.1 | phage portal protein | - |
| NDN18_RS15915 (NDN18_15910) | - | 3312272..3312487 (+) | 216 | WP_227552920.1 | hypothetical protein | - |
| NDN18_RS15920 (NDN18_15915) | - | 3312595..3312774 (+) | 180 | WP_000009390.1 | type II toxin-antitoxin system HicA family toxin | - |
| NDN18_RS15925 (NDN18_15920) | - | 3312860..3313273 (+) | 414 | WP_032058837.1 | antitoxin | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13240.82 Da Isoelectric Point: 9.8037
>NTDB_id=696577 NDN18_RS15705 WP_032058795.1 3277349..3277702(-) (ssb) [Acinetobacter baumannii strain Cl107]
MRGINKVILVGSLGANPLTKHYPNGNTYVQFSIATSEKYQDKNTGDWIENTEWHRIIAYGRLGETATQLLKKGSKVYVEG
SLRTRQFTDQRGQQGYITEVRANTFQSLDSLPQANPY
MRGINKVILVGSLGANPLTKHYPNGNTYVQFSIATSEKYQDKNTGDWIENTEWHRIIAYGRLGETATQLLKKGSKVYVEG
SLRTRQFTDQRGQQGYITEVRANTFQSLDSLPQANPY
Nucleotide
Download Length: 354 bp
>NTDB_id=696577 NDN18_RS15705 WP_032058795.1 3277349..3277702(-) (ssb) [Acinetobacter baumannii strain Cl107]
ATGCGTGGAATAAATAAGGTGATTTTAGTCGGTTCACTTGGAGCTAATCCATTAACCAAACATTATCCGAATGGTAATAC
TTACGTTCAGTTTTCGATTGCTACTTCAGAAAAGTATCAAGATAAAAACACTGGCGATTGGATTGAGAATACAGAATGGC
ATCGCATTATTGCATACGGTCGATTAGGTGAAACGGCCACGCAATTATTAAAAAAAGGTTCAAAAGTTTATGTAGAGGGT
TCTTTACGAACAAGACAATTTACCGACCAAAGAGGTCAGCAAGGTTATATAACCGAAGTAAGGGCAAATACCTTTCAGTC
TTTAGATAGCCTTCCGCAAGCAAACCCTTATTAA
ATGCGTGGAATAAATAAGGTGATTTTAGTCGGTTCACTTGGAGCTAATCCATTAACCAAACATTATCCGAATGGTAATAC
TTACGTTCAGTTTTCGATTGCTACTTCAGAAAAGTATCAAGATAAAAACACTGGCGATTGGATTGAGAATACAGAATGGC
ATCGCATTATTGCATACGGTCGATTAGGTGAAACGGCCACGCAATTATTAAAAAAAGGTTCAAAAGTTTATGTAGAGGGT
TCTTTACGAACAAGACAATTTACCGACCAAAGAGGTCAGCAAGGTTATATAACCGAAGTAAGGGCAAATACCTTTCAGTC
TTTAGATAGCCTTCCGCAAGCAAACCCTTATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
52.727 |
94.017 |
0.496 |
| ssb | Vibrio cholerae strain A1552 |
52.525 |
84.615 |
0.444 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
89.744 |
0.385 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
89.744 |
0.385 |