Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   NDN18_RS01675 Genome accession   NZ_CP098521
Coordinates   352630..353112 (+) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain Cl107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347630..358112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS01665 (NDN18_01665) pilX 347933..348751 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN18_RS01670 (NDN18_01670) pilY1 348763..352617 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NDN18_RS01675 (NDN18_01675) pilY2 352630..353112 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NDN18_RS01680 (NDN18_01680) pilE 353109..353534 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  NDN18_RS01685 (NDN18_01685) rpsP 353681..353932 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  NDN18_RS01690 (NDN18_01690) rimM 353952..354500 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  NDN18_RS01695 (NDN18_01695) trmD 354546..355286 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NDN18_RS01700 (NDN18_01700) rplS 355494..355862 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  NDN18_RS01705 (NDN18_01705) - 355915..356856 (-) 942 WP_085943974.1 triacylglycerol lipase -
  NDN18_RS01710 (NDN18_01710) - 356971..358002 (-) 1032 Protein_327 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=696560 NDN18_RS01675 WP_001046423.1 352630..353112(+) (pilY2) [Acinetobacter baumannii strain Cl107]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=696560 NDN18_RS01675 WP_001046423.1 352630..353112(+) (pilY2) [Acinetobacter baumannii strain Cl107]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419