Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NDN18_RS01665 Genome accession   NZ_CP098521
Coordinates   347933..348751 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Cl107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342933..353751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS01630 (NDN18_01630) - 343515..343645 (-) 131 Protein_311 hypothetical protein -
  NDN18_RS01635 (NDN18_01635) rpoZ 343684..343962 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NDN18_RS01640 (NDN18_01640) gmk 344035..344664 (-) 630 WP_000015937.1 guanylate kinase -
  NDN18_RS01645 (NDN18_01645) ispH 344787..345737 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NDN18_RS01650 (NDN18_01650) fimU 345907..346380 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDN18_RS01655 (NDN18_01655) pilV 346374..346934 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NDN18_RS01660 (NDN18_01660) pilW 346935..347936 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  NDN18_RS01665 (NDN18_01665) pilX 347933..348751 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN18_RS01670 (NDN18_01670) pilY1 348763..352617 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NDN18_RS01675 (NDN18_01675) pilY2 352630..353112 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NDN18_RS01680 (NDN18_01680) pilE 353109..353534 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=696558 NDN18_RS01665 WP_000149374.1 347933..348751(+) (pilX) [Acinetobacter baumannii strain Cl107]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=696558 NDN18_RS01665 WP_000149374.1 347933..348751(+) (pilX) [Acinetobacter baumannii strain Cl107]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993