Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDN18_RS01680 Genome accession   NZ_CP098521
Coordinates   353109..353534 (+) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain Cl107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348109..358534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS01670 (NDN18_01670) pilY1 348763..352617 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NDN18_RS01675 (NDN18_01675) pilY2 352630..353112 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NDN18_RS01680 (NDN18_01680) pilE 353109..353534 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  NDN18_RS01685 (NDN18_01685) rpsP 353681..353932 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  NDN18_RS01690 (NDN18_01690) rimM 353952..354500 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  NDN18_RS01695 (NDN18_01695) trmD 354546..355286 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NDN18_RS01700 (NDN18_01700) rplS 355494..355862 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  NDN18_RS01705 (NDN18_01705) - 355915..356856 (-) 942 WP_085943974.1 triacylglycerol lipase -
  NDN18_RS01710 (NDN18_01710) - 356971..358002 (-) 1032 Protein_327 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=696561 NDN18_RS01680 WP_000788337.1 353109..353534(+) (pilE) [Acinetobacter baumannii strain Cl107]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=696561 NDN18_RS01680 WP_000788337.1 353109..353534(+) (pilE) [Acinetobacter baumannii strain Cl107]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496