Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BES38_RS05420 Genome accession   NZ_CP098507
Coordinates   1068880..1069359 (-) Length   159 a.a.
NCBI ID   WP_039378873.1    Uniprot ID   A0A823FTQ9
Organism   Listeria monocytogenes strain L58-55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1063880..1074359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BES38_RS05385 (BES38_05385) - 1065390..1065917 (-) 528 WP_012951321.1 phage terminase small subunit P27 family -
  BES38_RS15255 - 1066012..1066374 (-) 363 WP_052199047.1 HNH endonuclease signature motif containing protein -
  BES38_RS05390 (BES38_05390) - 1066371..1066697 (-) 327 WP_014930679.1 hypothetical protein -
  BES38_RS05395 (BES38_05395) - 1066962..1067300 (-) 339 WP_014930678.1 hypothetical protein -
  BES38_RS05400 (BES38_05400) - 1067316..1067858 (-) 543 WP_023552281.1 tyrosine-type recombinase/integrase -
  BES38_RS05405 (BES38_05405) - 1067855..1068373 (-) 519 WP_023552279.1 sigma factor-like helix-turn-helix DNA-binding protein -
  BES38_RS05410 (BES38_05410) - 1068444..1068614 (-) 171 WP_223196559.1 hypothetical protein -
  BES38_RS05415 (BES38_05415) - 1068620..1068859 (-) 240 WP_039187812.1 hypothetical protein -
  BES38_RS05420 (BES38_05420) ssbA 1068880..1069359 (-) 480 WP_039378873.1 single-stranded DNA-binding protein Machinery gene
  BES38_RS05425 (BES38_05425) - 1069356..1069535 (-) 180 WP_039194681.1 hypothetical protein -
  BES38_RS05430 (BES38_05430) - 1069639..1069848 (-) 210 WP_085320264.1 hypothetical protein -
  BES38_RS05435 (BES38_05435) - 1069845..1070246 (-) 402 WP_014601510.1 hypothetical protein -
  BES38_RS05440 (BES38_05440) - 1070305..1070865 (-) 561 WP_014601511.1 DUF1642 domain-containing protein -
  BES38_RS05445 (BES38_05445) - 1070862..1071326 (-) 465 WP_039378864.1 class I SAM-dependent methyltransferase -
  BES38_RS05450 (BES38_05450) - 1071335..1071859 (-) 525 WP_031670005.1 hypothetical protein -
  BES38_RS05455 (BES38_05455) - 1071873..1072049 (-) 177 WP_014930672.1 hypothetical protein -
  BES38_RS05460 (BES38_05460) - 1072062..1072463 (-) 402 WP_014930671.1 hypothetical protein -
  BES38_RS05465 (BES38_05465) - 1072460..1072816 (-) 357 WP_014930670.1 phage terminase small subunit-related protein -
  BES38_RS05470 (BES38_05470) - 1072818..1073858 (-) 1041 WP_085320263.1 conserved phage C-terminal domain-containing protein -
  BES38_RS05475 (BES38_05475) - 1074031..1074357 (-) 327 WP_012951301.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17500.44 Da        Isoelectric Point: 5.2753

>NTDB_id=696465 BES38_RS05420 WP_039378873.1 1068880..1069359(-) (ssbA) [Listeria monocytogenes strain L58-55]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRAFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLEPKNNPGRAATNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLSF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=696465 BES38_RS05420 WP_039378873.1 1068880..1069359(-) (ssbA) [Listeria monocytogenes strain L58-55]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATAAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCAGGCGTTGATGGACGCGTACAGACTCGT
AATTATGAGGACAGCGACGGTAAACGTGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTGCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTATCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

53.757

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

66.667

0.415
  ssb Neisseria meningitidis MC58

33.333

100

0.365