Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UNDYM_RS24865 Genome accession   NZ_AP018441
Coordinates   5431897..5432394 (-) Length   165 a.a.
NCBI ID   WP_162043522.1    Uniprot ID   A0A809PSA5
Organism   Undibacterium sp. YM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5426897..5437394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS24845 (UNDYM_4953) - 5428288..5429298 (+) 1011 WP_162043518.1 right-handed parallel beta-helix repeat-containing protein -
  UNDYM_RS24850 (UNDYM_4954) - 5429317..5430588 (-) 1272 WP_162043519.1 DEAD/DEAH box helicase -
  UNDYM_RS24855 (UNDYM_4955) - 5430774..5431301 (+) 528 WP_162043520.1 GNAT family N-acetyltransferase -
  UNDYM_RS24860 (UNDYM_4956) - 5431326..5431745 (+) 420 WP_162043521.1 VOC family protein -
  UNDYM_RS24865 (UNDYM_4957) ssb 5431897..5432394 (-) 498 WP_162043522.1 single-stranded DNA-binding protein Machinery gene
  UNDYM_RS24870 (UNDYM_4958) - 5432429..5433612 (-) 1184 Protein_4939 MFS transporter -
  UNDYM_RS24875 (UNDYM_4959) uvrA 5433803..5436742 (+) 2940 WP_162043523.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17613.62 Da        Isoelectric Point: 7.0150

>NTDB_id=69640 UNDYM_RS24865 WP_162043522.1 5431897..5432394(-) (ssb) [Undibacterium sp. YM2]
MASVNKVIIVGNLGRDPETRYMPSGDAMTSITVATTDSWKDKSSGEKKEQTEWHRITFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKYTDKDGVEKYATDIKADSMQMLGSRQGMGGGAGMDDGGGYGGGGGGAPAPRPQAAPQQRQAPASRPAPNFSDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=69640 UNDYM_RS24865 WP_162043522.1 5431897..5432394(-) (ssb) [Undibacterium sp. YM2]
ATGGCATCAGTGAACAAGGTCATTATCGTTGGCAACCTTGGGAGAGACCCGGAAACCCGTTACATGCCATCAGGCGATGC
AATGACCAGCATCACCGTGGCGACCACCGATAGCTGGAAAGACAAGTCCAGCGGTGAAAAGAAAGAACAGACAGAATGGC
ACCGCATTACCTTCTTCGGCAAACTGGCAGAAATCGCCGGTCAATACCTGAAAAAAGGTTCGCAAGTCTACGTTGAAGGC
AGCCTGCGTACCCGCAAATACACCGACAAAGACGGCGTAGAAAAATACGCAACCGACATCAAGGCCGACAGCATGCAAAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCGCAGGTATGGATGATGGTGGTGGCTACGGTGGTGGCGGCGGCGGTGCAC
CAGCCCCACGCCCACAGGCAGCCCCACAACAACGCCAGGCCCCAGCCTCACGCCCGGCACCGAATTTCTCGGATATGGAT
GATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809PSA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.27

100

0.564
  ssb Vibrio cholerae strain A1552

50.556

100

0.552
  ssb Neisseria gonorrhoeae MS11

50

100

0.527
  ssb Neisseria meningitidis MC58

48.588

100

0.521

Multiple sequence alignment