Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NDK36_RS21880 Genome accession   NZ_CP098491
Coordinates   4097094..4097612 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain NB205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4092094..4102612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS21855 (NDK36_21855) - 4092354..4093382 (+) 1029 WP_014481504.1 AAA family ATPase -
  NDK36_RS21860 (NDK36_21860) - 4093360..4094634 (+) 1275 WP_014481505.1 MFS transporter -
  NDK36_RS21865 (NDK36_21865) ccpB 4095554..4095928 (-) 375 Protein_4262 transcriptional regulator CcpB -
  NDK36_RS21870 (NDK36_21870) xth 4095988..4096746 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  NDK36_RS21875 (NDK36_21875) rpsR 4096811..4097050 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NDK36_RS21880 (NDK36_21880) ssbA 4097094..4097612 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NDK36_RS21885 (NDK36_21885) rpsF 4097653..4097940 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NDK36_RS21890 (NDK36_21890) ychF 4098051..4099151 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NDK36_RS21895 (NDK36_21895) yyaE 4099278..4101281 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  NDK36_RS21900 (NDK36_21900) yyzM 4101332..4101538 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=696330 NDK36_RS21880 WP_003219228.1 4097094..4097612(-) (ssbA) [Bacillus subtilis strain NB205]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=696330 NDK36_RS21880 WP_003219228.1 4097094..4097612(-) (ssbA) [Bacillus subtilis strain NB205]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378