Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UNDKW_RS24915 Genome accession   NZ_AP018439
Coordinates   5545850..5546350 (-) Length   166 a.a.
NCBI ID   WP_162060944.1    Uniprot ID   A0A6N4TC16
Organism   Undibacterium sp. KW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5540850..5551350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDKW_RS24885 (UNDKW_4972) - 5541993..5542559 (-) 567 Protein_4950 hypothetical protein -
  UNDKW_RS24890 (UNDKW_4973) - 5542494..5542826 (+) 333 WP_162060939.1 right-handed parallel beta-helix repeat-containing protein -
  UNDKW_RS24895 (UNDKW_4974) - 5542820..5543233 (+) 414 WP_162060940.1 hypothetical protein -
  UNDKW_RS24900 (UNDKW_4975) - 5543252..5544523 (-) 1272 WP_162060941.1 DEAD/DEAH box helicase -
  UNDKW_RS24905 (UNDKW_4976) - 5544709..5545236 (+) 528 WP_162060942.1 GNAT family N-acetyltransferase -
  UNDKW_RS24910 (UNDKW_4977) - 5545261..5545680 (+) 420 WP_162060943.1 VOC family protein -
  UNDKW_RS24915 (UNDKW_4978) ssb 5545850..5546350 (-) 501 WP_162060944.1 single-stranded DNA-binding protein Machinery gene
  UNDKW_RS24920 (UNDKW_4979) - 5546385..5547569 (-) 1185 WP_162062102.1 MFS transporter -
  UNDKW_RS24925 (UNDKW_4980) uvrA 5547760..5550699 (+) 2940 WP_162060945.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17741.75 Da        Isoelectric Point: 7.0150

>NTDB_id=69618 UNDKW_RS24915 WP_162060944.1 5545850..5546350(-) (ssb) [Undibacterium sp. KW1]
MASVNKVIIVGNLGRDPETRYMPSGDAMTSITVATTDSWKDKSSGEKKEQTEWHRITFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKYTDKDGVEKYATDIKADSMQMLGSRQGMGGGAGMDDGGGYGGGGGGAPAPRPQAAPQQQRQAPASRPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=69618 UNDKW_RS24915 WP_162060944.1 5545850..5546350(-) (ssb) [Undibacterium sp. KW1]
ATGGCATCAGTGAACAAGGTCATTATCGTTGGCAACCTTGGGAGAGACCCGGAAACCCGTTACATGCCATCAGGCGATGC
AATGACCAGCATCACCGTGGCAACCACCGATAGCTGGAAAGACAAATCCAGCGGTGAAAAGAAAGAACAGACAGAATGGC
ACCGCATCACCTTCTTCGGCAAACTGGCAGAAATCGCCGGTCAATACCTGAAGAAAGGTTCGCAAGTCTACGTTGAAGGC
AGCCTGCGCACCCGCAAGTACACCGACAAAGACGGCGTAGAAAAATACGCAACCGACATCAAGGCCGACAGCATGCAAAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCGCAGGCATGGATGATGGTGGTGGCTACGGTGGCGGAGGTGGGGGTGCAC
CAGCACCACGCCCACAGGCAGCCCCACAACAACAACGCCAGGCCCCAGCCTCACGCCCGGCCCCGAACTTCTCGGATATG
GATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N4TC16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.56
  ssb Glaesserella parasuis strain SC1401

50

100

0.56
  ssb Neisseria meningitidis MC58

49.143

100

0.518
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.518

Multiple sequence alignment