Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDN13_RS13415 Genome accession   NZ_CP098480
Coordinates   2806019..2806618 (-) Length   199 a.a.
NCBI ID   WP_251115808.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2801019..2811618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS13390 (NDN13_13385) - 2801168..2802034 (-) 867 WP_251115805.1 pirin family protein -
  NDN13_RS13395 (NDN13_13390) ycaC 2802320..2802946 (+) 627 WP_004657244.1 isochorismate family cysteine hydrolase YcaC -
  NDN13_RS13400 (NDN13_13395) - 2803285..2804211 (+) 927 WP_251115806.1 LysR substrate-binding domain-containing protein -
  NDN13_RS13405 (NDN13_13400) - 2804220..2805140 (-) 921 WP_251118235.1 LysR substrate-binding domain-containing protein -
  NDN13_RS13410 (NDN13_13405) - 2805276..2805953 (+) 678 WP_251115807.1 hydrolase -
  NDN13_RS13415 (NDN13_13410) ssb 2806019..2806618 (-) 600 WP_251115808.1 single-stranded DNA-binding protein Machinery gene
  NDN13_RS13420 (NDN13_13415) - 2806670..2808034 (-) 1365 WP_251118236.1 MFS transporter -
  NDN13_RS13425 (NDN13_13420) - 2808189..2809271 (-) 1083 WP_241338286.1 DUF475 domain-containing protein -
  NDN13_RS13430 (NDN13_13425) tenA 2809442..2810116 (+) 675 WP_251115809.1 thiaminase II -
  NDN13_RS13435 (NDN13_13430) - 2810273..2810626 (-) 354 WP_251115810.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21779.51 Da        Isoelectric Point: 6.4819

>NTDB_id=696161 NDN13_RS13415 WP_251115808.1 2806019..2806618(-) (ssb) [Acinetobacter sp. C32I]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQSGGDFNQPRFNNNNNQGGGYQNTGYNNNNNNQGGYGQGGGFNGG
NQQGNYAGSPQAGNGFNTPKAAPQPAAAAPADLDDDLPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=696161 NDN13_RS13415 WP_251115808.1 2806019..2806618(-) (ssb) [Acinetobacter sp. C32I]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGTAAAGATCCAGAAACTAAAACTTTTCCAAATGGTGGATC
ATTAACTCAATTCTCGATTGCAACCAGTGAATCGTGGATGGATAAAAGTACGGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGTATCGTGTTGCACAACCGTTTAGGTGAAATTGCACAACAGTATCTCCGTAAAGGTTCAAAAGTATATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACTGAAATTCGTGGCGATCAAATGCAGAT
GCTGGATAGCCGTCAACAAGGCGAGCAGAGCGGTGGCGACTTTAACCAACCCCGTTTTAACAACAATAATAACCAAGGTG
GCGGTTACCAAAATACCGGTTATAACAATAACAACAACAACCAAGGTGGTTATGGTCAAGGCGGCGGCTTTAATGGCGGC
AACCAGCAAGGTAATTATGCAGGTAGCCCACAAGCAGGCAATGGTTTTAATACACCAAAAGCAGCACCTCAACCTGCTGC
GGCAGCACCTGCTGATTTAGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.922

100

0.553
  ssb Vibrio cholerae strain A1552

44.019

100

0.462
  ssb Neisseria gonorrhoeae MS11

37.245

98.492

0.367
  ssb Neisseria meningitidis MC58

37.245

98.492

0.367