Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NDN11_RS01420 Genome accession   NZ_CP098478
Coordinates   300367..301101 (+) Length   244 a.a.
NCBI ID   WP_251110568.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295367..306101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS01405 (NDN11_01405) ponA 295899..298499 (-) 2601 WP_251110566.1 penicillin-binding protein PBP1a -
  NDN11_RS01410 (NDN11_01410) comM 298662..299720 (+) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  NDN11_RS01415 (NDN11_01415) pilN 299720..300370 (+) 651 WP_251110567.1 PilN domain-containing protein Machinery gene
  NDN11_RS01420 (NDN11_01420) comO 300367..301101 (+) 735 WP_251110568.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN11_RS01425 (NDN11_01425) pilP 301104..301631 (+) 528 WP_167248608.1 pilus assembly protein PilP Machinery gene
  NDN11_RS01430 (NDN11_01430) pilQ 301693..303828 (+) 2136 WP_251111463.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN11_RS01435 (NDN11_01435) aroK 303848..304408 (+) 561 WP_251110569.1 shikimate kinase AroK -
  NDN11_RS01440 (NDN11_01440) aroB 304429..305511 (+) 1083 WP_167248609.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27286.82 Da        Isoelectric Point: 4.7367

>NTDB_id=696056 NDN11_RS01420 WP_251110568.1 300367..301101(+) (comO) [Acinetobacter sp. C26M]
MKLDKSDDLNQDTVATKKKKMTVDQFFQQFNTLDMNNYGSWPLSVKITCWIFVFLAVAALGYFVVIKSQLESIANAEAQE
QSLLNEFKEKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGAFVTGIAALPRIVTLHDFTVEATADTQKKSDIPVVNYTVKAKTYRYVGADEQTNNAAGAATATTPPA
QGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=696056 NDN11_RS01420 WP_251110568.1 300367..301101(+) (comO) [Acinetobacter sp. C26M]
ATGAAATTAGATAAATCAGATGATTTAAATCAAGACACCGTTGCTACAAAGAAAAAGAAAATGACGGTAGACCAATTCTT
CCAGCAATTCAATACGCTGGATATGAATAATTATGGCAGTTGGCCGTTATCGGTCAAAATTACCTGCTGGATTTTCGTTT
TCTTGGCGGTTGCTGCATTGGGCTATTTTGTGGTGATTAAGTCTCAGCTTGAATCAATTGCAAATGCAGAAGCTCAAGAA
CAAAGTTTGCTGAATGAATTTAAAGAAAAAGATTCAAAATTGCGTAATTTGCAACAATATCAAGCGCAATTGCAAGAAAT
GGAAGCCAATTTTAATCAACAGTTAGAGCAACTACCAAAAGAAACAGAAATTCCAAGCTTGGTTGAAGACATTAACTTAA
CGGGCGTGAACTCTGGGCTGAAATTTAAAAATATTCGTCTTGAGAATGAAGTGAAGCAAGAGTTCTTTATTGAACAGCCA
ATCAGTATTGATGCGACAGGTGATTATCACGCCTTTGGTGCTTTTGTAACGGGTATTGCTGCTTTACCTCGGATCGTGAC
TTTGCATGATTTTACGGTTGAAGCAACAGCAGATACACAGAAAAAATCAGACATTCCTGTAGTGAACTATACCGTTAAAG
CAAAAACATATCGTTATGTTGGGGCAGATGAGCAAACGAATAATGCTGCTGGTGCAGCTACAGCAACTACTCCACCTGCG
CAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.77

100

0.738
  pilO Acinetobacter baumannii D1279779

72.131

100

0.721