Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NDN11_RS01425 Genome accession   NZ_CP098478
Coordinates   301104..301631 (+) Length   175 a.a.
NCBI ID   WP_167248608.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296104..306631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS01410 (NDN11_01410) comM 298662..299720 (+) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  NDN11_RS01415 (NDN11_01415) pilN 299720..300370 (+) 651 WP_251110567.1 PilN domain-containing protein Machinery gene
  NDN11_RS01420 (NDN11_01420) comO 300367..301101 (+) 735 WP_251110568.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN11_RS01425 (NDN11_01425) pilP 301104..301631 (+) 528 WP_167248608.1 pilus assembly protein PilP Machinery gene
  NDN11_RS01430 (NDN11_01430) pilQ 301693..303828 (+) 2136 WP_251111463.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN11_RS01435 (NDN11_01435) aroK 303848..304408 (+) 561 WP_251110569.1 shikimate kinase AroK -
  NDN11_RS01440 (NDN11_01440) aroB 304429..305511 (+) 1083 WP_167248609.1 3-dehydroquinate synthase -
  NDN11_RS01445 (NDN11_01445) - 305531..306397 (+) 867 WP_251110570.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19273.45 Da        Isoelectric Point: 9.6398

>NTDB_id=696057 NDN11_RS01425 WP_167248608.1 301104..301631(+) (pilP) [Acinetobacter sp. C26M]
MNNYKLLLGFLIGASLVGCDSRIDAVNQKMAEIRNQPPLPIEPAPVFTPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTSNTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=696057 NDN11_RS01425 WP_167248608.1 301104..301631(+) (pilP) [Acinetobacter sp. C26M]
GTGAATAATTATAAATTATTACTTGGTTTCTTGATTGGGGCGAGTTTGGTGGGGTGTGATTCACGTATTGATGCAGTGAA
TCAGAAGATGGCAGAAATTCGTAATCAGCCACCTTTGCCAATTGAGCCAGCACCCGTTTTTACCCCTGTGCCATTATTTA
ACTATTCAGCACATCAGCTTAAAAGCCCATTTATGCCAAGTTCATTGGCCGCTGAATTGAAAATTATGGCGGGTAAGCGG
GTTTATCCGAATTTTAATCGCCAGCCACAGCCTTTAGAGAGTTATGCGCTGGAATCATTGAATATGAAGGGCAGTATGCG
TGGTAAAACCAGCAATACGATTGCCCTGATTCAAACACCAGACGGTCAAATTGAACGTGTGCAAGTCGGAAGTTATTTGG
GTATGAATCAAGGGCGTATTATTAAAATTAGCCCAACCCAAATCGATTTGGTGGAGATTGTACCTGATGGTCGAGAAGGC
TATGTCGAGAGACCTCGTACACTCGTTTTAATTGGACCAGCGCCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

82.286

100

0.823
  comL Acinetobacter baylyi ADP1

73.143

100

0.731
  pilP Legionella pneumophila strain ERS1305867

33.508

100

0.366