Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDN11_RS00990 Genome accession   NZ_CP098478
Coordinates   212672..213265 (+) Length   197 a.a.
NCBI ID   WP_251110522.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207672..218265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS00965 (NDN11_00965) - 207707..208060 (+) 354 WP_004803688.1 DUF1304 domain-containing protein -
  NDN11_RS00970 (NDN11_00970) - 208367..209101 (+) 735 WP_251110520.1 hypothetical protein -
  NDN11_RS00975 (NDN11_00975) tenA 209178..209846 (-) 669 WP_251110521.1 thiaminase II -
  NDN11_RS00980 (NDN11_00980) - 210018..211100 (+) 1083 WP_005209435.1 DUF475 domain-containing protein -
  NDN11_RS00985 (NDN11_00985) - 211259..212620 (+) 1362 WP_167248542.1 MFS transporter -
  NDN11_RS00990 (NDN11_00990) ssb 212672..213265 (+) 594 WP_251110522.1 single-stranded DNA-binding protein Machinery gene
  NDN11_RS00995 (NDN11_00995) - 213807..215456 (-) 1650 WP_251110523.1 hypothetical protein -
  NDN11_RS01000 (NDN11_01000) - 215716..216173 (-) 458 Protein_195 transposase -
  NDN11_RS01005 (NDN11_01005) - 216216..217142 (-) 927 WP_251110524.1 LysR substrate-binding domain-containing protein -
  NDN11_RS01010 (NDN11_01010) ycaC 217457..218083 (-) 627 WP_251110525.1 isochorismate family cysteine hydrolase YcaC -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21654.38 Da        Isoelectric Point: 6.4819

>NTDB_id=696053 NDN11_RS00990 WP_251110522.1 212672..213265(+) (ssb) [Acinetobacter sp. C26M]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQSGGDFNQPRFNNNNNQGGSYQNTGYNNNNNQSGYGQGGGFNGGN
QQGNYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=696053 NDN11_RS00990 WP_251110522.1 212672..213265(+) (ssb) [Acinetobacter sp. C26M]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGTAAAGATCCGGAAACAAAAACTTTTCCAAATGGTGGATC
ATTGACTCAATTCTCGATTGCGACAAGTGAATCGTGGATGGACAAAAGTACAGGTGAACGTAAAGAGCAAACAGAATGGC
ACCGTATCGTGTTACATAACCGTTTAGGTGAGATTGCACAGCAATATCTGCGTAAAGGTTCAAAAGTGTATATCGAAGGT
TCATTGCGTACCCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACGGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATAGCCGTCAACAAGGCGAGCAGAGCGGTGGTGACTTTAATCAACCTCGTTTTAACAACAATAATAACCAAGGTG
GCAGTTACCAAAATACCGGTTATAACAATAACAACAATCAAAGTGGTTATGGTCAAGGCGGTGGTTTTAATGGTGGCAAC
CAGCAAGGTAATTATGCAGGTAGTCCACAAGCAGGCAACGGTTTTAATACACCAAAAGCAGCGCCGCAACCTGCTGCTGC
ACCTGCTGACTTAGATGATGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.97

100

0.543
  ssb Vibrio cholerae strain A1552

43.75

100

0.462
  ssb Neisseria gonorrhoeae MS11

38.974

98.985

0.386
  ssb Neisseria meningitidis MC58

38.974

98.985

0.386