Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9980_RS11745 Genome accession   NZ_CP098401
Coordinates   2392538..2393095 (-) Length   185 a.a.
NCBI ID   WP_250751024.1    Uniprot ID   -
Organism   Sphingomonas donggukensis strain RMG20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2387538..2398095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9980_RS11720 (M9980_11720) - 2388225..2389337 (+) 1113 WP_250751014.1 homoserine O-acetyltransferase -
  M9980_RS11725 (M9980_11725) - 2389438..2389875 (+) 438 WP_250751016.1 GNAT family N-acetyltransferase -
  M9980_RS11730 (M9980_11730) metW 2389872..2390459 (+) 588 WP_250751018.1 methionine biosynthesis protein MetW -
  M9980_RS11735 (M9980_11735) - 2390456..2392006 (+) 1551 WP_250751019.1 cryptochrome/photolyase family protein -
  M9980_RS11740 (M9980_11740) - 2392010..2392378 (-) 369 WP_250751021.1 cupredoxin domain-containing protein -
  M9980_RS11745 (M9980_11745) ssb 2392538..2393095 (-) 558 WP_250751024.1 single-stranded DNA-binding protein Machinery gene
  M9980_RS11750 (M9980_11750) - 2393094..2393315 (+) 222 WP_340689100.1 DUF4169 family protein -
  M9980_RS11755 (M9980_11755) - 2393525..2395381 (-) 1857 WP_250751026.1 ferrous iron transporter B -
  M9980_RS11760 (M9980_11760) - 2395394..2395657 (-) 264 WP_250751029.1 FeoA family protein -
  M9980_RS11765 (M9980_11765) - 2395715..2396371 (-) 657 WP_250751036.1 COQ9 family protein -
  M9980_RS11770 (M9980_11770) - 2396371..2397309 (-) 939 WP_250751037.1 DMT family transporter -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19332.98 Da        Isoelectric Point: 5.0256

>NTDB_id=695277 M9980_RS11745 WP_250751024.1 2392538..2393095(-) (ssb) [Sphingomonas donggukensis strain RMG20]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSESWKDRNTGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGALQTRKWQDQQGQDKYSTEIVLQGFNSVLTMLDGAPGAGGGAGGGGGGYQRGGGDDFGGGDDFAGNSSRGGGNFNSGA
QKSSGAAKNDFGGGYGDDLDDDVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=695277 M9980_RS11745 WP_250751024.1 2392538..2393095(-) (ssb) [Sphingomonas donggukensis strain RMG20]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTGGGCAATCTGGGGCGCGACCCCGAAAGCCGCAGCTTCCAGAATGGCGG
CAAGGTCGTGAACCTGCGCATCGCCACGTCGGAATCGTGGAAGGATCGCAACACCGGCGAGCGTAAGGAAAAGACCGAGT
GGCATTCGGTCGCGATCTTCAACGAGGGCCTCGCCAACGTTGCCGAGCGGTTCCTGCGCAAGGGCAGCAAGGTGTACATC
GAGGGCGCTCTCCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACAAATATTCGACCGAGATCGTGCTGCAGGGCTT
CAACAGCGTCCTGACGATGCTGGACGGCGCGCCCGGTGCAGGTGGTGGAGCCGGCGGCGGTGGCGGTGGCTACCAGCGCG
GCGGGGGCGATGACTTCGGCGGCGGCGACGATTTCGCCGGCAACTCCTCGCGCGGGGGCGGCAATTTCAACTCCGGCGCG
CAGAAGAGTTCGGGCGCGGCGAAGAACGACTTCGGTGGCGGCTACGGCGACGACCTGGACGACGACGTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.503
  ssb Vibrio cholerae strain A1552

49.724

97.838

0.486
  ssb Neisseria meningitidis MC58

37.5

99.459

0.373
  ssb Neisseria gonorrhoeae MS11

37.5

99.459

0.373