Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NBT15_RS04230 | Genome accession | NZ_CP098368 |
| Coordinates | 852847..853323 (+) | Length | 158 a.a. |
| NCBI ID | WP_008840867.1 | Uniprot ID | A0AAW8YED4 |
| Organism | Pediococcus acidilactici strain WT | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 841413..862516 | 852847..853323 | within | 0 |
Gene organization within MGE regions
Location: 841413..862516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBT15_RS04110 (NBT15_04105) | - | 841413..842588 (-) | 1176 | WP_166481432.1 | tyrosine-type recombinase/integrase | - |
| NBT15_RS04115 (NBT15_04110) | - | 842676..842945 (-) | 270 | WP_008842114.1 | hypothetical protein | - |
| NBT15_RS04120 (NBT15_04115) | - | 843027..843554 (-) | 528 | WP_008842113.1 | PIN domain-containing protein | - |
| NBT15_RS04125 (NBT15_04120) | - | 843547..843882 (-) | 336 | WP_166481433.1 | STAS-like domain-containing protein | - |
| NBT15_RS04130 (NBT15_04125) | - | 843912..844808 (-) | 897 | WP_166481434.1 | hypothetical protein | - |
| NBT15_RS04135 (NBT15_04130) | - | 844887..845651 (-) | 765 | WP_008840851.1 | DUF4352 domain-containing protein | - |
| NBT15_RS04140 (NBT15_04135) | - | 845720..846127 (-) | 408 | WP_036685006.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NBT15_RS04145 (NBT15_04140) | - | 846139..846501 (-) | 363 | WP_008840853.1 | helix-turn-helix domain-containing protein | - |
| NBT15_RS04150 (NBT15_04145) | - | 846644..846874 (+) | 231 | WP_008840854.1 | helix-turn-helix transcriptional regulator | - |
| NBT15_RS04155 (NBT15_04150) | - | 846871..847008 (+) | 138 | WP_008840855.1 | hypothetical protein | - |
| NBT15_RS04160 (NBT15_04155) | - | 847040..847408 (+) | 369 | WP_036685008.1 | hypothetical protein | - |
| NBT15_RS04165 (NBT15_04160) | - | 847400..847597 (-) | 198 | WP_036685010.1 | hypothetical protein | - |
| NBT15_RS04170 (NBT15_04165) | - | 847666..847881 (+) | 216 | WP_036685013.1 | hypothetical protein | - |
| NBT15_RS04175 (NBT15_04170) | - | 847966..848430 (+) | 465 | WP_232623517.1 | helix-turn-helix transcriptional regulator | - |
| NBT15_RS04180 (NBT15_04175) | - | 848431..848712 (+) | 282 | WP_008840858.1 | hypothetical protein | - |
| NBT15_RS04185 (NBT15_04180) | - | 848714..848857 (+) | 144 | WP_158002712.1 | hypothetical protein | - |
| NBT15_RS04190 (NBT15_04185) | - | 848950..849195 (+) | 246 | WP_008840859.1 | hypothetical protein | - |
| NBT15_RS04195 (NBT15_04190) | bet | 849188..849985 (+) | 798 | WP_008840860.1 | phage recombination protein Bet | - |
| NBT15_RS04200 (NBT15_04195) | - | 849894..850775 (+) | 882 | WP_052017552.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| NBT15_RS04205 (NBT15_04200) | - | 850787..851251 (+) | 465 | WP_008840862.1 | hypothetical protein | - |
| NBT15_RS04210 (NBT15_04205) | - | 851278..851961 (+) | 684 | WP_008840863.1 | putative HNHc nuclease | - |
| NBT15_RS04215 (NBT15_04210) | - | 851945..852352 (+) | 408 | WP_036685016.1 | hypothetical protein | - |
| NBT15_RS04220 (NBT15_04215) | - | 852373..852603 (+) | 231 | WP_008840865.1 | helix-turn-helix domain-containing protein | - |
| NBT15_RS04225 (NBT15_04220) | - | 852618..852854 (+) | 237 | WP_052017553.1 | hypothetical protein | - |
| NBT15_RS04230 (NBT15_04225) | ssb | 852847..853323 (+) | 477 | WP_008840867.1 | single-stranded DNA-binding protein | Machinery gene |
| NBT15_RS04235 (NBT15_04230) | - | 853335..853640 (+) | 306 | WP_036685019.1 | helix-turn-helix domain-containing protein | - |
| NBT15_RS04240 (NBT15_04235) | - | 853754..853990 (+) | 237 | WP_036685021.1 | hypothetical protein | - |
| NBT15_RS04245 (NBT15_04240) | - | 853983..854219 (+) | 237 | WP_008840869.1 | hypothetical protein | - |
| NBT15_RS04250 | - | 854438..854641 (+) | 204 | WP_036685024.1 | hypothetical protein | - |
| NBT15_RS04260 (NBT15_04250) | - | 855152..855967 (+) | 816 | WP_008840871.1 | abortive infection family protein | - |
| NBT15_RS04265 (NBT15_04255) | - | 856100..856927 (+) | 828 | WP_036685027.1 | hypothetical protein | - |
| NBT15_RS04270 (NBT15_04260) | - | 856980..857327 (+) | 348 | WP_052017554.1 | helix-turn-helix domain-containing protein | - |
| NBT15_RS04275 (NBT15_04265) | - | 857365..857652 (+) | 288 | WP_404932576.1 | terminase | - |
| NBT15_RS04280 (NBT15_04270) | - | 857649..858947 (+) | 1299 | WP_008840874.1 | PBSX family phage terminase large subunit | - |
| NBT15_RS04285 (NBT15_04275) | - | 859281..860450 (+) | 1170 | WP_036685030.1 | hydroxymethylglutaryl-CoA synthase | - |
| NBT15_RS04290 (NBT15_04280) | - | 860552..861160 (-) | 609 | WP_008840876.1 | hypothetical protein | - |
| NBT15_RS04295 (NBT15_04285) | lexA | 861241..861870 (-) | 630 | WP_002831524.1 | transcriptional repressor LexA | - |
| NBT15_RS04300 (NBT15_04290) | - | 861977..862225 (+) | 249 | WP_008840877.1 | DUF896 domain-containing protein | - |
| NBT15_RS04305 (NBT15_04295) | - | 862295..862516 (+) | 222 | WP_002831526.1 | YneF family protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17648.30 Da Isoelectric Point: 4.5762
>NTDB_id=695237 NBT15_RS04230 WP_008840867.1 852847..853323(+) (ssb) [Pediococcus acidilactici strain WT]
MINRAVLIGRLTRDPELKYTTNGVAVASFNLAVNRQFTNQDGEREADFINCVMWRKAAEIFCDYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSFLESKSQSNQNNGSYVPQDNGFGQNNGPTTPNNTNPNDPFSGKQGQSIDITDEDLPF
MINRAVLIGRLTRDPELKYTTNGVAVASFNLAVNRQFTNQDGEREADFINCVMWRKAAEIFCDYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSFLESKSQSNQNNGSYVPQDNGFGQNNGPTTPNNTNPNDPFSGKQGQSIDITDEDLPF
Nucleotide
Download Length: 477 bp
>NTDB_id=695237 NBT15_RS04230 WP_008840867.1 852847..853323(+) (ssb) [Pediococcus acidilactici strain WT]
ATGATTAACCGAGCGGTATTAATCGGGCGCTTAACAAGGGACCCAGAACTAAAGTACACAACCAATGGCGTAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAATTCACAAACCAAGATGGCGAACGTGAAGCAGATTTTATCAATTGCGTAATGT
GGCGGAAAGCGGCAGAAATTTTCTGCGACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGACGAATCCAAACTCGT
TCATACGAAAATCAACAAGGACAACGTGTTTATGTCACTGAAGTGGTCGCGGATAACTTTTCCTTTTTGGAATCTAAAAG
TCAGAGCAATCAAAACAATGGCAGTTATGTGCCACAAGACAACGGGTTTGGTCAAAATAATGGGCCAACTACGCCGAATA
ACACGAACCCAAATGATCCGTTTAGCGGAAAGCAAGGGCAATCCATTGATATCACCGATGAAGATTTACCGTTCTAG
ATGATTAACCGAGCGGTATTAATCGGGCGCTTAACAAGGGACCCAGAACTAAAGTACACAACCAATGGCGTAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAATTCACAAACCAAGATGGCGAACGTGAAGCAGATTTTATCAATTGCGTAATGT
GGCGGAAAGCGGCAGAAATTTTCTGCGACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGACGAATCCAAACTCGT
TCATACGAAAATCAACAAGGACAACGTGTTTATGTCACTGAAGTGGTCGCGGATAACTTTTCCTTTTTGGAATCTAAAAG
TCAGAGCAATCAAAACAATGGCAGTTATGTGCCACAAGACAACGGGTTTGGTCAAAATAATGGGCCAACTACGCCGAATA
ACACGAACCCAAATGATCCGTTTAGCGGAAAGCAAGGGCAATCCATTGATATCACCGATGAAGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.895 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.491 |
100 |
0.608 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.089 |
0.399 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
51.282 |
74.051 |
0.38 |