Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB069_RS01305 Genome accession   NZ_CP098325
Coordinates   280250..280777 (+) Length   175 a.a.
NCBI ID   WP_250587103.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain kcgeb_e1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 275250..285777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB069_RS22485 - 275423..275548 (+) 126 WP_284677023.1 hypothetical protein -
  NB069_RS01285 (NB069_01285) aphA 275573..276286 (+) 714 WP_250587100.1 acid phosphatase AphA -
  NB069_RS01290 (NB069_01290) - 276402..276818 (+) 417 WP_250587101.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NB069_RS01295 (NB069_01295) - 276821..277174 (+) 354 WP_039031945.1 MmcQ/YjbR family DNA-binding protein -
  NB069_RS01300 (NB069_01300) uvrA 277175..280000 (-) 2826 WP_250587102.1 excinuclease ABC subunit UvrA -
  NB069_RS01305 (NB069_01305) ssb 280250..280777 (+) 528 WP_250587103.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NB069_RS01310 (NB069_01310) - 280862..281143 (-) 282 WP_039031948.1 YjcB family protein -
  NB069_RS01315 (NB069_01315) - 281689..283092 (+) 1404 WP_250587104.1 sensor domain-containing diguanylate cyclase -
  NB069_RS01320 (NB069_01320) - 283432..285018 (+) 1587 WP_250587105.1 EAL domain-containing protein -
  NB069_RS01325 (NB069_01325) soxS 285015..285341 (-) 327 WP_103177869.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=694938 NB069_RS01305 WP_250587103.1 280250..280777(+) (ssb) [Leclercia adecarboxylata strain kcgeb_e1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAPA
QSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=694938 NB069_RS01305 WP_250587103.1 280250..280777(+) (ssb) [Leclercia adecarboxylata strain kcgeb_e1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGCCGTCTGCACCTGCA
CAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.789
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.611
  ssb Neisseria meningitidis MC58

47.191

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.48