Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NB630_RS05710 | Genome accession | NZ_CP098255 |
| Coordinates | 1181000..1181503 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain N4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1162091..1185563 | 1181000..1181503 | within | 0 |
Gene organization within MGE regions
Location: 1162091..1185563
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB630_RS05565 (NB630_05565) | - | 1162091..1162354 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| NB630_RS05570 (NB630_05570) | - | 1162492..1163064 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| NB630_RS05575 (NB630_05575) | - | 1163245..1163613 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| NB630_RS05580 (NB630_05580) | - | 1163906..1164565 (+) | 660 | Protein_1090 | site-specific integrase | - |
| NB630_RS05585 (NB630_05585) | - | 1164571..1165578 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| NB630_RS05590 (NB630_05590) | - | 1166153..1166332 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| NB630_RS05595 (NB630_05595) | - | 1166348..1166860 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| NB630_RS05600 (NB630_05600) | - | 1166978..1167259 (-) | 282 | WP_001577971.1 | hypothetical protein | - |
| NB630_RS05605 (NB630_05605) | - | 1167555..1168523 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| NB630_RS05610 (NB630_05610) | - | 1168670..1168753 (-) | 84 | Protein_1096 | terminase small subunit | - |
| NB630_RS05615 (NB630_05615) | - | 1168800..1169369 (-) | 570 | WP_001293091.1 | terminase small subunit | - |
| NB630_RS05620 (NB630_05620) | - | 1169366..1169578 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| NB630_RS05625 (NB630_05625) | - | 1169710..1170237 (-) | 528 | WP_000771380.1 | spore coat protein | - |
| NB630_RS05630 (NB630_05630) | - | 1170288..1170506 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| NB630_RS05635 (NB630_05635) | - | 1170507..1171103 (-) | 597 | WP_038412914.1 | hypothetical protein | - |
| NB630_RS05640 (NB630_05640) | - | 1171115..1171456 (-) | 342 | WP_001190612.1 | hypothetical protein | - |
| NB630_RS05645 (NB630_05645) | - | 1171973..1172614 (-) | 642 | WP_001019780.1 | hypothetical protein | - |
| NB630_RS05650 (NB630_05650) | - | 1172611..1172991 (-) | 381 | WP_000356936.1 | hypothetical protein | - |
| NB630_RS05655 (NB630_05655) | - | 1173303..1175012 (-) | 1710 | WP_000447449.1 | DUF927 domain-containing protein | - |
| NB630_RS05660 (NB630_05660) | - | 1175026..1175895 (-) | 870 | WP_001002723.1 | primase alpha helix C-terminal domain-containing protein | - |
| NB630_RS05665 (NB630_05665) | - | 1175960..1176283 (-) | 324 | WP_001103945.1 | DUF1474 family protein | - |
| NB630_RS05670 (NB630_05670) | - | 1176286..1176495 (-) | 210 | WP_001058486.1 | hypothetical protein | - |
| NB630_RS05675 (NB630_05675) | - | 1176488..1176634 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| NB630_RS05680 (NB630_05680) | - | 1176646..1176918 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| NB630_RS05685 (NB630_05685) | - | 1176919..1177131 (-) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| NB630_RS05690 (NB630_05690) | - | 1177275..1177970 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| NB630_RS05695 (NB630_05695) | - | 1178426..1179640 (+) | 1215 | WP_000270132.1 | site-specific integrase | - |
| NB630_RS05700 (NB630_05700) | - | 1179641..1180474 (+) | 834 | WP_000370312.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NB630_RS05705 (NB630_05705) | rpsR | 1180706..1180948 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| NB630_RS05710 (NB630_05710) | ssbA | 1181000..1181503 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| NB630_RS05715 (NB630_05715) | rpsF | 1181524..1181820 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| NB630_RS05720 (NB630_05720) | - | 1182064..1182255 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| NB630_RS05725 (NB630_05725) | ychF | 1182341..1183438 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| NB630_RS05730 (NB630_05730) | - | 1183450..1183653 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| NB630_RS05735 (NB630_05735) | - | 1183683..1184564 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| NB630_RS05740 (NB630_05740) | - | 1184718..1185563 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=694798 NB630_RS05710 WP_000934799.1 1181000..1181503(-) (ssbA) [Staphylococcus aureus strain N4]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=694798 NB630_RS05710 WP_000934799.1 1181000..1181503(-) (ssbA) [Staphylococcus aureus strain N4]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |